Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 26512 | 0.65 | 0.448545 |
Target: 5'- aUUGGCCCGCCGCCcuaguguACCAgGAaauucccCAGCc- -3' miRNA: 3'- -AGUCGGGUGGCGG-------UGGUgUU-------GUCGuc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 3605 | 0.66 | 0.44054 |
Target: 5'- gUCGGUggacgcaGCUGCCGCCGCAGCuGCu- -3' miRNA: 3'- -AGUCGgg-----UGGCGGUGGUGUUGuCGuc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 30452 | 0.66 | 0.430651 |
Target: 5'- --cGCCUACCugcGCCACCACcccCAGUAc -3' miRNA: 3'- aguCGGGUGG---CGGUGGUGuu-GUCGUc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 10129 | 0.66 | 0.430651 |
Target: 5'- --cGCCaGCCGCCGCCGCAcuuccucauCGGCu- -3' miRNA: 3'- aguCGGgUGGCGGUGGUGUu--------GUCGuc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 31027 | 0.66 | 0.430651 |
Target: 5'- --cGCCCAacuCCGCauuCGCCA--GCAGCAGg -3' miRNA: 3'- aguCGGGU---GGCG---GUGGUguUGUCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 29856 | 0.66 | 0.420892 |
Target: 5'- gCAGuCCCACUGCUaguACCAaua-AGCAGa -3' miRNA: 3'- aGUC-GGGUGGCGG---UGGUguugUCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 25943 | 0.66 | 0.420892 |
Target: 5'- cCAGCacuagaaaauCCACaGCgGCgGCGGCGGCAGg -3' miRNA: 3'- aGUCG----------GGUGgCGgUGgUGUUGUCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 15821 | 0.66 | 0.401783 |
Target: 5'- -uGGCCCugCGCagcaaggcucgCGCCGCAcgcAUGGCGGu -3' miRNA: 3'- agUCGGGugGCG-----------GUGGUGU---UGUCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 25011 | 0.66 | 0.401783 |
Target: 5'- -gAGUgCCACUGCCGCUGCAACcucuGCAc -3' miRNA: 3'- agUCG-GGUGGCGGUGGUGUUGu---CGUc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 9278 | 0.66 | 0.401783 |
Target: 5'- -nGGCCCccucccCCGCCACCACcGCcugaggaggaAGUAGa -3' miRNA: 3'- agUCGGGu-----GGCGGUGGUGuUG----------UCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 26223 | 0.67 | 0.392437 |
Target: 5'- gUAGCCCGcgcCCGcCCACaCACGGaaaaaGGCGGg -3' miRNA: 3'- aGUCGGGU---GGC-GGUG-GUGUUg----UCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 17165 | 0.67 | 0.383234 |
Target: 5'- gCGGgaUgCGCCGCCACCcccacCGGCGGCGGc -3' miRNA: 3'- aGUC--GgGUGGCGGUGGu----GUUGUCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 31579 | 0.67 | 0.374175 |
Target: 5'- gCAGCCCGCCGggGCCu--GCAGUAc -3' miRNA: 3'- aGUCGGGUGGCggUGGuguUGUCGUc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 20696 | 0.67 | 0.374175 |
Target: 5'- cCAGCCCuaccCCGCCAacuaccccuacCCGCucauCGGCAa -3' miRNA: 3'- aGUCGGGu---GGCGGU-----------GGUGuu--GUCGUc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 13933 | 0.67 | 0.373277 |
Target: 5'- cCAGCgggggcugcaucgCCGCCGCCGCCGCcauugccuGCuGCAu -3' miRNA: 3'- aGUCG-------------GGUGGCGGUGGUGu-------UGuCGUc -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 15739 | 0.67 | 0.373277 |
Target: 5'- gUAGCaCCACCGCCAUgcgUGCGGCGcgagccuugcugcGCAGg -3' miRNA: 3'- aGUCG-GGUGGCGGUG---GUGUUGU-------------CGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 13573 | 0.67 | 0.365262 |
Target: 5'- --cGCCCguaaacGCCGCUGgCACGACAGgCAGc -3' miRNA: 3'- aguCGGG------UGGCGGUgGUGUUGUC-GUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 16157 | 0.67 | 0.356498 |
Target: 5'- uUCAuCCuuCACCGCCGCCGCGggGCcGUAGa -3' miRNA: 3'- -AGUcGG--GUGGCGGUGGUGU--UGuCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 25594 | 0.67 | 0.356498 |
Target: 5'- gUAG-CCGCCGCCGCCAgAccgucguccuCGGCGGa -3' miRNA: 3'- aGUCgGGUGGCGGUGGUgUu---------GUCGUC- -5' |
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11904 | 3' | -57.9 | NC_003266.2 | + | 31223 | 0.67 | 0.356498 |
Target: 5'- gUCAacCCCAUCGUCAUCACc-CAGCAGu -3' miRNA: 3'- -AGUc-GGGUGGCGGUGGUGuuGUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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