miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11904 3' -57.9 NC_003266.2 + 13361 0.67 0.347882
Target:  5'- gCGGCCucgggCACCGCUGCgGCAGCAcccguGCGGc -3'
miRNA:   3'- aGUCGG-----GUGGCGGUGgUGUUGU-----CGUC- -5'
11904 3' -57.9 NC_003266.2 + 16078 0.67 0.347028
Target:  5'- aUCGcGCCUgagaucuACgGCC-CCGCGGCGGCGGu -3'
miRNA:   3'- -AGU-CGGG-------UGgCGGuGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 12266 0.68 0.339416
Target:  5'- cCAGCCCGgccUCGUCGCCGCgAAUGGCc- -3'
miRNA:   3'- aGUCGGGU---GGCGGUGGUG-UUGUCGuc -5'
11904 3' -57.9 NC_003266.2 + 14599 0.68 0.339416
Target:  5'- -aAGUCCACC-CCGCagccggGCAACAGCAc -3'
miRNA:   3'- agUCGGGUGGcGGUGg-----UGUUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 20957 0.68 0.3311
Target:  5'- cCAGUgCACCaGCC-CCACcGCGGCGu -3'
miRNA:   3'- aGUCGgGUGG-CGGuGGUGuUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 11777 0.68 0.322935
Target:  5'- cUCAGCUCgcGCCGCCugCugGcgcuuaccgcGCGGCGc -3'
miRNA:   3'- -AGUCGGG--UGGCGGugGugU----------UGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 9304 0.68 0.322935
Target:  5'- gUCuGCCCgugCGCCGCCGgCGAC-GCAGg -3'
miRNA:   3'- -AGuCGGGug-GCGGUGGU-GUUGuCGUC- -5'
11904 3' -57.9 NC_003266.2 + 16937 0.68 0.322935
Target:  5'- cCA-CCCGCCGCCgucgucGCCGC-ACAGCuGa -3'
miRNA:   3'- aGUcGGGUGGCGG------UGGUGuUGUCGuC- -5'
11904 3' -57.9 NC_003266.2 + 16913 0.68 0.299348
Target:  5'- cCGGCUC-CCGCCGCCGCAAgAcCAc -3'
miRNA:   3'- aGUCGGGuGGCGGUGGUGUUgUcGUc -5'
11904 3' -57.9 NC_003266.2 + 9607 0.68 0.299348
Target:  5'- aCAcCCCACCGCCGCCAgAAgaaaccgugcuCAGCc- -3'
miRNA:   3'- aGUcGGGUGGCGGUGGUgUU-----------GUCGuc -5'
11904 3' -57.9 NC_003266.2 + 13885 0.69 0.294793
Target:  5'- gCAGCCC-CCGCUggaggcuccuuacguGCCACcGCGGUAc -3'
miRNA:   3'- aGUCGGGuGGCGG---------------UGGUGuUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 23254 0.69 0.291787
Target:  5'- cCAGCCaC-CCGCCggGCCGCGAgAGCc- -3'
miRNA:   3'- aGUCGG-GuGGCGG--UGGUGUUgUCGuc -5'
11904 3' -57.9 NC_003266.2 + 3812 0.69 0.284376
Target:  5'- -aGGCCUcgaGCUggGCCAUCaACAGCAGCAGc -3'
miRNA:   3'- agUCGGG---UGG--CGGUGG-UGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 12721 0.69 0.284376
Target:  5'- gCuGUCCgugaagGgCGCCACCAgCAGCAGCAGc -3'
miRNA:   3'- aGuCGGG------UgGCGGUGGU-GUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 11591 0.69 0.283643
Target:  5'- cUCAGCaCCgaaaaguugaugGCCGCCAgCuucucggACAGCGGCAGc -3'
miRNA:   3'- -AGUCG-GG------------UGGCGGUgG-------UGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 3710 0.69 0.263039
Target:  5'- --cGCCCAUgGCCAuuCCGCGcacggcgcugGCGGCAGa -3'
miRNA:   3'- aguCGGGUGgCGGU--GGUGU----------UGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 13287 0.7 0.249548
Target:  5'- cCGGCCgCACgggUGCUGCCGCAGCGGUg- -3'
miRNA:   3'- aGUCGG-GUG---GCGGUGGUGUUGUCGuc -5'
11904 3' -57.9 NC_003266.2 + 17238 0.7 0.24302
Target:  5'- -uGGCgCGCCGCCGCCGguGgGGguGg -3'
miRNA:   3'- agUCGgGUGGCGGUGGUguUgUCguC- -5'
11904 3' -57.9 NC_003266.2 + 24551 0.7 0.236634
Target:  5'- -aGGCCCGCCGCgACUACAuCcGCGa -3'
miRNA:   3'- agUCGGGUGGCGgUGGUGUuGuCGUc -5'
11904 3' -57.9 NC_003266.2 + 10160 0.7 0.236634
Target:  5'- --cGCCC-CCGCCACCgaGCGAUGGCc- -3'
miRNA:   3'- aguCGGGuGGCGGUGG--UGUUGUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.