miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 30802 0.7 0.368461
Target:  5'- -aAACGCCUGcugccgaucgcccaGCGCGACAgCGgCCAgAGCg -3'
miRNA:   3'- caUUGCGGAC--------------CGCGUUGU-GC-GGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 10701 0.7 0.3712
Target:  5'- --cGCGCCaaGgGCGACGC-CCAGGCg -3'
miRNA:   3'- cauUGCGGacCgCGUUGUGcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 14461 0.7 0.3712
Target:  5'- -cGGCGCC-GGC-CAGCAcCGCCAcgacGGCg -3'
miRNA:   3'- caUUGCGGaCCGcGUUGU-GCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 9010 0.7 0.380429
Target:  5'- ---uCGCCcgGGCggcuaugccgGCGGCAcCGCCGAGCa -3'
miRNA:   3'- cauuGCGGa-CCG----------CGUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 24817 0.7 0.39838
Target:  5'- cGUGAuCGCCUgGGCGUcgcccuuGGCGCGCagauAGCg -3'
miRNA:   3'- -CAUU-GCGGA-CCGCG-------UUGUGCGgu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 4367 0.7 0.39934
Target:  5'- ---uCGCaccagagGGCGCuGgGCGCCAGGCg -3'
miRNA:   3'- cauuGCGga-----CCGCGuUgUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30254 0.7 0.39934
Target:  5'- ----aGCUUGGCG-AGCuGCGCCAGGUa -3'
miRNA:   3'- cauugCGGACCGCgUUG-UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21056 0.7 0.39934
Target:  5'- ---cCGCCgucgUGGCGguGCugGCC-GGCg -3'
miRNA:   3'- cauuGCGG----ACCGCguUGugCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 22976 0.69 0.408043
Target:  5'- -cAGCgGCCUGGCGCugccGCAcaucaaccucaccCGCCAGGa -3'
miRNA:   3'- caUUG-CGGACCGCGu---UGU-------------GCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 9461 0.69 0.409018
Target:  5'- ---uCGaCCUGGCGCAgGCcCGCCuGGCc -3'
miRNA:   3'- cauuGC-GGACCGCGU-UGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 5610 0.69 0.418841
Target:  5'- -aGGC-CCUGcuGCGCGACgcgauccucaaGCGCCAGGCc -3'
miRNA:   3'- caUUGcGGAC--CGCGUUG-----------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 4702 0.69 0.418841
Target:  5'- ---cCGCuCUGGcCGCuguCGCGCUggGCg -3'
miRNA:   3'- cauuGCG-GACC-GCGuu-GUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 17978 0.69 0.418841
Target:  5'- ---gUGCCUGG-GCAacaGCugGCgCAGGCa -3'
miRNA:   3'- cauuGCGGACCgCGU---UGugCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 27469 0.69 0.418841
Target:  5'- ---gUGCCggUGGC-CAGCcagGCGCCGAGCa -3'
miRNA:   3'- cauuGCGG--ACCGcGUUG---UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5703 0.69 0.428806
Target:  5'- -cGGCGCCgccGGCGCGGCuguuguCGCUgcggucggccucGAGCa -3'
miRNA:   3'- caUUGCGGa--CCGCGUUGu-----GCGG------------UUCG- -5'
11910 5' -54.3 NC_003278.1 + 16745 0.69 0.428806
Target:  5'- cGUAcCGCCgccaacuGCGCGACugGCCgGAGUc -3'
miRNA:   3'- -CAUuGCGGac-----CGCGUUGugCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 12871 0.69 0.428806
Target:  5'- -aAAUGCuCUGGCGcCAGCGgGUCAacgaGGCg -3'
miRNA:   3'- caUUGCG-GACCGC-GUUGUgCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 14057 0.69 0.428806
Target:  5'- ----gGCCUGGC-CGGCGCcgaggcccuggGCCAGGCc -3'
miRNA:   3'- cauugCGGACCGcGUUGUG-----------CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9590 0.69 0.434852
Target:  5'- ---cCGaCCUGGaccaacagcggcaGCAGCuGCGCCAGGCg -3'
miRNA:   3'- cauuGC-GGACCg------------CGUUG-UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31625 0.69 0.43891
Target:  5'- ----gGCCUGG-GCGGCGgCGCCGcaGGCu -3'
miRNA:   3'- cauugCGGACCgCGUUGU-GCGGU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.