Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 3210 | 0.67 | 0.505042 |
Target: 5'- cUCGGCAUCGAggauggugacgaucUgGCGCCAGAuGCGg--- -3' miRNA: 3'- -GGCCGUAGCU--------------A-CGCGGUCU-CGUacug -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 3234 | 0.7 | 0.325948 |
Target: 5'- gCGGCGUCGAUauCGCCGG-GCAgcGGCa -3' miRNA: 3'- gGCCGUAGCUAc-GCGGUCuCGUa-CUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 3466 | 0.73 | 0.231932 |
Target: 5'- gCCGGCcgCGGcuCGCCAGAcGCggGACg -3' miRNA: 3'- -GGCCGuaGCUacGCGGUCU-CGuaCUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 4861 | 0.71 | 0.286762 |
Target: 5'- uCCGGCGUUGccGCGCCGGucaGGCuUGGa -3' miRNA: 3'- -GGCCGUAGCuaCGCGGUC---UCGuACUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 5710 | 0.68 | 0.425507 |
Target: 5'- gCCGGCgcggcuguuGUCGcUGCggucgGCCucGAGCAUGACc -3' miRNA: 3'- -GGCCG---------UAGCuACG-----CGGu-CUCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 6999 | 0.7 | 0.325948 |
Target: 5'- aCGGCGUCGAUGCcGUggugCAGcAGCGcgaUGGCg -3' miRNA: 3'- gGCCGUAGCUACG-CG----GUC-UCGU---ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 7264 | 0.67 | 0.508276 |
Target: 5'- aCCaGcCAUCGAUcaGCGCCAGgucgaagccgcgGGCAUGGg -3' miRNA: 3'- -GGcC-GUAGCUA--CGCGGUC------------UCGUACUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 9606 | 0.69 | 0.387238 |
Target: 5'- gCGGCAgcaGcUGCGCCAG-GCGcUGGCc -3' miRNA: 3'- gGCCGUag-CuACGCGGUCuCGU-ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 12287 | 0.68 | 0.425507 |
Target: 5'- gCCGGCcccuggCGA-GCGCguagcuGAGCGUGGCg -3' miRNA: 3'- -GGCCGua----GCUaCGCGgu----CUCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 12345 | 0.71 | 0.286762 |
Target: 5'- cUCGGCG-CGGgcgGCGCgCAGGGCGcucUGGCg -3' miRNA: 3'- -GGCCGUaGCUa--CGCG-GUCUCGU---ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 12633 | 0.71 | 0.301975 |
Target: 5'- cCUGaGCAUCccccugcaGAUggGCGCCAGcGCAUGACa -3' miRNA: 3'- -GGC-CGUAG--------CUA--CGCGGUCuCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 13258 | 0.69 | 0.387238 |
Target: 5'- gCGGCcgucGUCGAUGCGCUuGAGCucgaggGAg -3' miRNA: 3'- gGCCG----UAGCUACGCGGuCUCGua----CUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 13413 | 0.66 | 0.552153 |
Target: 5'- aUCaGCGUCGA--CGCCuGGGCAUGGa -3' miRNA: 3'- -GGcCGUAGCUacGCGGuCUCGUACUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 13824 | 0.74 | 0.186203 |
Target: 5'- aCGGuUGUCGAuggugauggccUGCGCCGGGGCGcUGGCg -3' miRNA: 3'- gGCC-GUAGCU-----------ACGCGGUCUCGU-ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 14274 | 0.72 | 0.25816 |
Target: 5'- gCCGGCAggUCGAUGC-CCAGguAGCccagGACg -3' miRNA: 3'- -GGCCGU--AGCUACGcGGUC--UCGua--CUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 14630 | 0.66 | 0.585794 |
Target: 5'- aCCgGGCAggcgaaugcCGAUgGUGCC-GAGCAUGAa -3' miRNA: 3'- -GG-CCGUa--------GCUA-CGCGGuCUCGUACUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 15129 | 0.67 | 0.476359 |
Target: 5'- uCCGGCAUCuuaccUGCuGCCAGAGgCGguaccGGCa -3' miRNA: 3'- -GGCCGUAGcu---ACG-CGGUCUC-GUa----CUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 15969 | 0.76 | 0.132524 |
Target: 5'- gCCGGCGUUGcugaggcgcGUGCGCaguugcugCAGGGCGUGGCu -3' miRNA: 3'- -GGCCGUAGC---------UACGCG--------GUCUCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 17078 | 0.72 | 0.244754 |
Target: 5'- gCCGGUAUCGucuUGCuggaaugaGCCGGcgaagcgcAGCAUGACg -3' miRNA: 3'- -GGCCGUAGCu--ACG--------CGGUC--------UCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 17244 | 0.68 | 0.445468 |
Target: 5'- gCGGuCAUCGGcgGCGUCAGcGCcgAUGGCa -3' miRNA: 3'- gGCC-GUAGCUa-CGCGGUCuCG--UACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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