miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11917 3' -55.5 NC_003278.1 + 23505 0.66 0.552153
Target:  5'- -gGGCGUCGcgGuCGCCGuuGGGCggGAUc -3'
miRNA:   3'- ggCCGUAGCuaC-GCGGU--CUCGuaCUG- -5'
11917 3' -55.5 NC_003278.1 + 6999 0.7 0.325948
Target:  5'- aCGGCGUCGAUGCcGUggugCAGcAGCGcgaUGGCg -3'
miRNA:   3'- gGCCGUAGCUACG-CG----GUC-UCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 18878 0.71 0.301975
Target:  5'- -gGGCGUCGGUGuCGUC-GAGC-UGGCg -3'
miRNA:   3'- ggCCGUAGCUAC-GCGGuCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 28995 1.12 0.000312
Target:  5'- gCCGGCAUCGAUGCGCCAGAGCAUGACg -3'
miRNA:   3'- -GGCCGUAGCUACGCGGUCUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 20517 0.67 0.508276
Target:  5'- cCCGGC---GGUGaCGCCGGAGU-UGGCc -3'
miRNA:   3'- -GGCCGuagCUAC-GCGGUCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 7264 0.67 0.508276
Target:  5'- aCCaGcCAUCGAUcaGCGCCAGgucgaagccgcgGGCAUGGg -3'
miRNA:   3'- -GGcC-GUAGCUA--CGCGGUC------------UCGUACUg -5'
11917 3' -55.5 NC_003278.1 + 14630 0.66 0.585794
Target:  5'- aCCgGGCAggcgaaugcCGAUgGUGCC-GAGCAUGAa -3'
miRNA:   3'- -GG-CCGUa--------GCUA-CGCGGuCUCGUACUg -5'
11917 3' -55.5 NC_003278.1 + 27033 0.66 0.574527
Target:  5'- gUGGCGaCGAUggcGUGCCAGAuGC-UGACc -3'
miRNA:   3'- gGCCGUaGCUA---CGCGGUCU-CGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 25103 0.66 0.56331
Target:  5'- gCCgGGCGccugaUCuGcgGCGUCucGAGCAUGACg -3'
miRNA:   3'- -GG-CCGU-----AG-CuaCGCGGu-CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 28275 0.7 0.325948
Target:  5'- gCCGGCcgCGAUcuucucaagGCGCCAGGcccGCAgcucgcgguUGACg -3'
miRNA:   3'- -GGCCGuaGCUA---------CGCGGUCU---CGU---------ACUG- -5'
11917 3' -55.5 NC_003278.1 + 13258 0.69 0.387238
Target:  5'- gCGGCcgucGUCGAUGCGCUuGAGCucgaggGAg -3'
miRNA:   3'- gGCCG----UAGCUACGCGGuCUCGua----CUg -5'
11917 3' -55.5 NC_003278.1 + 5710 0.68 0.425507
Target:  5'- gCCGGCgcggcuguuGUCGcUGCggucgGCCucGAGCAUGACc -3'
miRNA:   3'- -GGCCG---------UAGCuACG-----CGGu-CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 31580 0.66 0.541063
Target:  5'- aUCGGCAgcUUGA-GCGCCAG-GCGcgGAUc -3'
miRNA:   3'- -GGCCGU--AGCUaCGCGGUCuCGUa-CUG- -5'
11917 3' -55.5 NC_003278.1 + 32522 0.7 0.351305
Target:  5'- gCGGCcguUCGGUGauCGCCAG-GUGUGGCu -3'
miRNA:   3'- gGCCGu--AGCUAC--GCGGUCuCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 32751 0.66 0.541063
Target:  5'- uCUGGCGUCGcgcagcugGUGCGCCAGuucuucccgGGgGUGcGCa -3'
miRNA:   3'- -GGCCGUAGC--------UACGCGGUC---------UCgUAC-UG- -5'
11917 3' -55.5 NC_003278.1 + 12287 0.68 0.425507
Target:  5'- gCCGGCcccuggCGA-GCGCguagcuGAGCGUGGCg -3'
miRNA:   3'- -GGCCGua----GCUaCGCGgu----CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 21881 0.7 0.341847
Target:  5'- aUGGgAUCGGuacccgcucaaucUGCGCCAGGGCuucGGCg -3'
miRNA:   3'- gGCCgUAGCU-------------ACGCGGUCUCGua-CUG- -5'
11917 3' -55.5 NC_003278.1 + 3234 0.7 0.325948
Target:  5'- gCGGCGUCGAUauCGCCGG-GCAgcGGCa -3'
miRNA:   3'- gGCCGUAGCUAc-GCGGUCuCGUa-CUG- -5'
11917 3' -55.5 NC_003278.1 + 33198 0.67 0.530048
Target:  5'- gCCGGUGcUCGAcG-GCCGGGGCAUccucGACu -3'
miRNA:   3'- -GGCCGU-AGCUaCgCGGUCUCGUA----CUG- -5'
11917 3' -55.5 NC_003278.1 + 23246 0.67 0.486891
Target:  5'- cCCGGUAU-GAcGcCGCCGuGGGUAUGACc -3'
miRNA:   3'- -GGCCGUAgCUaC-GCGGU-CUCGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.