Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11918 | 3' | -53.7 | NC_003278.1 | + | 28328 | 1.09 | 0.000847 |
Target: 5'- uCACCGCGGCAAUGACCGCAACUUCGAg -3' miRNA: 3'- -GUGGCGCCGUUACUGGCGUUGAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 22824 | 0.76 | 0.176541 |
Target: 5'- cCACCGCGuGUggUGGCgGCAACUggcugaggUCGAu -3' miRNA: 3'- -GUGGCGC-CGuuACUGgCGUUGA--------AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 14153 | 0.74 | 0.239576 |
Target: 5'- uCGgCGCGGCAGcgcUGAUCGCGGCgagCGAg -3' miRNA: 3'- -GUgGCGCCGUU---ACUGGCGUUGaa-GCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 10628 | 0.73 | 0.288808 |
Target: 5'- aCugCGCGGCAAgcagGGCCGUA--UUCGGc -3' miRNA: 3'- -GugGCGCCGUUa---CUGGCGUugAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 2436 | 0.72 | 0.312225 |
Target: 5'- uGCUgGCGGCGGUGGCUGCGACgUUUGc -3' miRNA: 3'- gUGG-CGCCGUUACUGGCGUUG-AAGCu -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 28214 | 0.72 | 0.320344 |
Target: 5'- cCGCCGCcucggcccgGGCGuaccuggcccAUGcCCGCGGCUUCGAc -3' miRNA: 3'- -GUGGCG---------CCGU----------UACuGGCGUUGAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 19185 | 0.71 | 0.363292 |
Target: 5'- cCGCCGaUGGCgAAUGACCuGCAGCUgcgCGu -3' miRNA: 3'- -GUGGC-GCCG-UUACUGG-CGUUGAa--GCu -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 23721 | 0.71 | 0.372347 |
Target: 5'- cCACCGCGGCGAUGguGCCGaGGCggaucagguucUCGAu -3' miRNA: 3'- -GUGGCGCCGUUAC--UGGCgUUGa----------AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 31718 | 0.7 | 0.419867 |
Target: 5'- gACC-CGGCcggccuCCGCGACUUCGAg -3' miRNA: 3'- gUGGcGCCGuuacu-GGCGUUGAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 23258 | 0.7 | 0.439876 |
Target: 5'- cCGCCGUGGguAUGACCGaccaGGCUgaugcccuuggCGAu -3' miRNA: 3'- -GUGGCGCCguUACUGGCg---UUGAa----------GCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 10435 | 0.7 | 0.460418 |
Target: 5'- gCGCC-CGGcCAAUGGCUGaCAGCcUCGAg -3' miRNA: 3'- -GUGGcGCC-GUUACUGGC-GUUGaAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 29759 | 0.7 | 0.460418 |
Target: 5'- gCGCCGCuGGC--UGACC-CAGCUgUCGAa -3' miRNA: 3'- -GUGGCG-CCGuuACUGGcGUUGA-AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 7784 | 0.69 | 0.481457 |
Target: 5'- gCACCGcCGGC-GUGACCGaGGCgguccUCGAg -3' miRNA: 3'- -GUGGC-GCCGuUACUGGCgUUGa----AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 15277 | 0.69 | 0.502951 |
Target: 5'- gGCCGUGGCGgugGUGACCGUcuccaGGCUcUGGc -3' miRNA: 3'- gUGGCGCCGU---UACUGGCG-----UUGAaGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 4412 | 0.69 | 0.502951 |
Target: 5'- uCGCCGUcgaaggGGCGAccacggacGGCCGCAACaUCGAg -3' miRNA: 3'- -GUGGCG------CCGUUa-------CUGGCGUUGaAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 17764 | 0.69 | 0.502951 |
Target: 5'- gCACCuGCaGCGAUGAuCCGCuguucgcCUUCGAg -3' miRNA: 3'- -GUGG-CGcCGUUACU-GGCGuu-----GAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 2979 | 0.68 | 0.524853 |
Target: 5'- uGCCgGCGcGCGcgGGCCGCGACagaGAa -3' miRNA: 3'- gUGG-CGC-CGUuaCUGGCGUUGaagCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 5726 | 0.68 | 0.53594 |
Target: 5'- uCGCUGCGGuCGgccucgagcAUGACCauugGCAugUUCGAc -3' miRNA: 3'- -GUGGCGCC-GU---------UACUGG----CGUugAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 22224 | 0.68 | 0.547107 |
Target: 5'- uCGCCGaCGGCAcc--CCGCGGCggaUCGAg -3' miRNA: 3'- -GUGGC-GCCGUuacuGGCGUUGa--AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 18286 | 0.67 | 0.581012 |
Target: 5'- aCGCCGC--CGAUGACCGCGcuauuggucgcgGCUUCa- -3' miRNA: 3'- -GUGGCGccGUUACUGGCGU------------UGAAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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