Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11918 | 3' | -53.7 | NC_003278.1 | + | 2032 | 0.66 | 0.64979 |
Target: 5'- uGCCGCGGCGcauguacuUGGCCaGCGGCgccugcagCGGc -3' miRNA: 3'- gUGGCGCCGUu-------ACUGG-CGUUGaa------GCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 2436 | 0.72 | 0.312225 |
Target: 5'- uGCUgGCGGCGGUGGCUGCGACgUUUGc -3' miRNA: 3'- gUGG-CGCCGUUACUGGCGUUG-AAGCu -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 2979 | 0.68 | 0.524853 |
Target: 5'- uGCCgGCGcGCGcgGGCCGCGACagaGAa -3' miRNA: 3'- gUGG-CGC-CGUuaCUGGCGUUGaagCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 2999 | 0.66 | 0.661257 |
Target: 5'- aCACC-UGGCGAUcaccgaacGGCCGCAGCg-CGAa -3' miRNA: 3'- -GUGGcGCCGUUA--------CUGGCGUUGaaGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 3469 | 0.66 | 0.64979 |
Target: 5'- gGCCGCGGCucgccaGACgCGgGACguucUCGAa -3' miRNA: 3'- gUGGCGCCGuua---CUG-GCgUUGa---AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 4412 | 0.69 | 0.502951 |
Target: 5'- uCGCCGUcgaaggGGCGAccacggacGGCCGCAACaUCGAg -3' miRNA: 3'- -GUGGCG------CCGUUa-------CUGGCGUUGaAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 5726 | 0.68 | 0.53594 |
Target: 5'- uCGCUGCGGuCGgccucgagcAUGACCauugGCAugUUCGAc -3' miRNA: 3'- -GUGGCGCC-GU---------UACUGG----CGUugAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 7784 | 0.69 | 0.481457 |
Target: 5'- gCACCGcCGGC-GUGACCGaGGCgguccUCGAg -3' miRNA: 3'- -GUGGC-GCCGuUACUGGCgUUGa----AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 7960 | 0.67 | 0.603861 |
Target: 5'- gGaaGCGGCAGUGACUGCGGgugUCa- -3' miRNA: 3'- gUggCGCCGUUACUGGCGUUga-AGcu -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 8382 | 0.67 | 0.638306 |
Target: 5'- gCGCUGCGGCGcccgcuuccGCCGCAGCgucUCGu -3' miRNA: 3'- -GUGGCGCCGUuac------UGGCGUUGa--AGCu -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 8540 | 0.66 | 0.669267 |
Target: 5'- -cCCGCGGCAAcgucgccgcccugcUGAggccauCCGCAugaccCUUCGAu -3' miRNA: 3'- guGGCGCCGUU--------------ACU------GGCGUu----GAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 10267 | 0.66 | 0.661257 |
Target: 5'- gCGCCGCGagGAUGGCCGCuACgaugUGAg -3' miRNA: 3'- -GUGGCGCcgUUACUGGCGuUGaa--GCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 10435 | 0.7 | 0.460418 |
Target: 5'- gCGCC-CGGcCAAUGGCUGaCAGCcUCGAg -3' miRNA: 3'- -GUGGcGCC-GUUACUGGC-GUUGaAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 10628 | 0.73 | 0.288808 |
Target: 5'- aCugCGCGGCAAgcagGGCCGUA--UUCGGc -3' miRNA: 3'- -GugGCGCCGUUa---CUGGCGUugAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 11935 | 0.66 | 0.684089 |
Target: 5'- -cCCGCGGCGAUGcCCaagGCAGCcagcCGGu -3' miRNA: 3'- guGGCGCCGUUACuGG---CGUUGaa--GCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 14153 | 0.74 | 0.239576 |
Target: 5'- uCGgCGCGGCAGcgcUGAUCGCGGCgagCGAg -3' miRNA: 3'- -GUgGCGCCGUU---ACUGGCGUUGaa-GCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 15277 | 0.69 | 0.502951 |
Target: 5'- gGCCGUGGCGgugGUGACCGUcuccaGGCUcUGGc -3' miRNA: 3'- gUGGCGCCGU---UACUGGCG-----UUGAaGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 17121 | 0.67 | 0.626816 |
Target: 5'- aCGCCGuUGGCAcUGACUGCGccguACUgcUUGAg -3' miRNA: 3'- -GUGGC-GCCGUuACUGGCGU----UGA--AGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 17764 | 0.69 | 0.502951 |
Target: 5'- gCACCuGCaGCGAUGAuCCGCuguucgcCUUCGAg -3' miRNA: 3'- -GUGG-CGcCGUUACU-GGCGuu-----GAAGCU- -5' |
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11918 | 3' | -53.7 | NC_003278.1 | + | 18286 | 0.67 | 0.581012 |
Target: 5'- aCGCCGC--CGAUGACCGCGcuauuggucgcgGCUUCa- -3' miRNA: 3'- -GUGGCGccGUUACUGGCGU------------UGAAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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