miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11918 3' -53.7 NC_003278.1 + 32829 0.66 0.672694
Target:  5'- cCACgGUGGCGcgGGuCCGCGACa---- -3'
miRNA:   3'- -GUGgCGCCGUuaCU-GGCGUUGaagcu -5'
11918 3' -53.7 NC_003278.1 + 32330 0.67 0.603861
Target:  5'- uGCCGaGGCccGUGGCUGCGAUcugUUCGAc -3'
miRNA:   3'- gUGGCgCCGu-UACUGGCGUUG---AAGCU- -5'
11918 3' -53.7 NC_003278.1 + 32258 0.66 0.661257
Target:  5'- gCGCCGuCGGCGAcauccucGGCCGCAugccGCUgcccggCGAu -3'
miRNA:   3'- -GUGGC-GCCGUUa------CUGGCGU----UGAa-----GCU- -5'
11918 3' -53.7 NC_003278.1 + 31718 0.7 0.419867
Target:  5'- gACC-CGGCcggccuCCGCGACUUCGAg -3'
miRNA:   3'- gUGGcGCCGuuacu-GGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 29855 0.66 0.65438
Target:  5'- aGCCGCGGCGcUGguGCCGUugaagccgaucaucaGGCggUCGAg -3'
miRNA:   3'- gUGGCGCCGUuAC--UGGCG---------------UUGa-AGCU- -5'
11918 3' -53.7 NC_003278.1 + 29759 0.7 0.460418
Target:  5'- gCGCCGCuGGC--UGACC-CAGCUgUCGAa -3'
miRNA:   3'- -GUGGCG-CCGuuACUGGcGUUGA-AGCU- -5'
11918 3' -53.7 NC_003278.1 + 29500 0.67 0.592419
Target:  5'- cCACCgGCGGCA--GGCCGCccaugcGCUUCu- -3'
miRNA:   3'- -GUGG-CGCCGUuaCUGGCGu-----UGAAGcu -5'
11918 3' -53.7 NC_003278.1 + 29389 0.66 0.684089
Target:  5'- --aCGUGGCGGUGcGCgGCGGCgugaUCGAg -3'
miRNA:   3'- gugGCGCCGUUAC-UGgCGUUGa---AGCU- -5'
11918 3' -53.7 NC_003278.1 + 29216 0.67 0.603861
Target:  5'- --gCGgGGCAGUGGCCGCcGCcucUUGAg -3'
miRNA:   3'- gugGCgCCGUUACUGGCGuUGa--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 28328 1.09 0.000847
Target:  5'- uCACCGCGGCAAUGACCGCAACUUCGAg -3'
miRNA:   3'- -GUGGCGCCGUUACUGGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 28214 0.72 0.320344
Target:  5'- cCGCCGCcucggcccgGGCGuaccuggcccAUGcCCGCGGCUUCGAc -3'
miRNA:   3'- -GUGGCG---------CCGU----------UACuGGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 27135 0.67 0.638306
Target:  5'- aCGCUGCGGCGGaagcgGgcGCCGCAGCgcUGGu -3'
miRNA:   3'- -GUGGCGCCGUUa----C--UGGCGUUGaaGCU- -5'
11918 3' -53.7 NC_003278.1 + 23721 0.71 0.372347
Target:  5'- cCACCGCGGCGAUGguGCCGaGGCggaucagguucUCGAu -3'
miRNA:   3'- -GUGGCGCCGUUAC--UGGCgUUGa----------AGCU- -5'
11918 3' -53.7 NC_003278.1 + 23258 0.7 0.439876
Target:  5'- cCGCCGUGGguAUGACCGaccaGGCUgaugcccuuggCGAu -3'
miRNA:   3'- -GUGGCGCCguUACUGGCg---UUGAa----------GCU- -5'
11918 3' -53.7 NC_003278.1 + 22824 0.76 0.176541
Target:  5'- cCACCGCGuGUggUGGCgGCAACUggcugaggUCGAu -3'
miRNA:   3'- -GUGGCGC-CGuuACUGgCGUUGA--------AGCU- -5'
11918 3' -53.7 NC_003278.1 + 22224 0.68 0.547107
Target:  5'- uCGCCGaCGGCAcc--CCGCGGCggaUCGAg -3'
miRNA:   3'- -GUGGC-GCCGUuacuGGCGUUGa--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 22112 0.66 0.64979
Target:  5'- gUACUGCGGCAgAUGGCUGaCAcCgggUCGGc -3'
miRNA:   3'- -GUGGCGCCGU-UACUGGC-GUuGa--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 20708 0.67 0.615331
Target:  5'- uCGCCGUcggGGUAGUGACCGCcucGCUg--- -3'
miRNA:   3'- -GUGGCG---CCGUUACUGGCGu--UGAagcu -5'
11918 3' -53.7 NC_003278.1 + 20632 0.67 0.603861
Target:  5'- aGCCGgcUGGCAGUGGCUGCGuuGCccguaaUCGAg -3'
miRNA:   3'- gUGGC--GCCGUUACUGGCGU--UGa-----AGCU- -5'
11918 3' -53.7 NC_003278.1 + 19786 0.66 0.695431
Target:  5'- cCAgCGCGGCAGcgcucUGgauGCCGCGGCUguaGGu -3'
miRNA:   3'- -GUgGCGCCGUU-----AC---UGGCGUUGAag-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.