miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11918 3' -53.7 NC_003278.1 + 14153 0.74 0.239576
Target:  5'- uCGgCGCGGCAGcgcUGAUCGCGGCgagCGAg -3'
miRNA:   3'- -GUgGCGCCGUU---ACUGGCGUUGaa-GCU- -5'
11918 3' -53.7 NC_003278.1 + 8382 0.67 0.638306
Target:  5'- gCGCUGCGGCGcccgcuuccGCCGCAGCgucUCGu -3'
miRNA:   3'- -GUGGCGCCGUuac------UGGCGUUGa--AGCu -5'
11918 3' -53.7 NC_003278.1 + 2032 0.66 0.64979
Target:  5'- uGCCGCGGCGcauguacuUGGCCaGCGGCgccugcagCGGc -3'
miRNA:   3'- gUGGCGCCGUu-------ACUGG-CGUUGaa------GCU- -5'
11918 3' -53.7 NC_003278.1 + 22112 0.66 0.64979
Target:  5'- gUACUGCGGCAgAUGGCUGaCAcCgggUCGGc -3'
miRNA:   3'- -GUGGCGCCGU-UACUGGC-GUuGa--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 2999 0.66 0.661257
Target:  5'- aCACC-UGGCGAUcaccgaacGGCCGCAGCg-CGAa -3'
miRNA:   3'- -GUGGcGCCGUUA--------CUGGCGUUGaaGCU- -5'
11918 3' -53.7 NC_003278.1 + 10267 0.66 0.661257
Target:  5'- gCGCCGCGagGAUGGCCGCuACgaugUGAg -3'
miRNA:   3'- -GUGGCGCcgUUACUGGCGuUGaa--GCU- -5'
11918 3' -53.7 NC_003278.1 + 32258 0.66 0.661257
Target:  5'- gCGCCGuCGGCGAcauccucGGCCGCAugccGCUgcccggCGAu -3'
miRNA:   3'- -GUGGC-GCCGUUa------CUGGCGU----UGAa-----GCU- -5'
11918 3' -53.7 NC_003278.1 + 8540 0.66 0.669267
Target:  5'- -cCCGCGGCAAcgucgccgcccugcUGAggccauCCGCAugaccCUUCGAu -3'
miRNA:   3'- guGGCGCCGUU--------------ACU------GGCGUu----GAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 29389 0.66 0.684089
Target:  5'- --aCGUGGCGGUGcGCgGCGGCgugaUCGAg -3'
miRNA:   3'- gugGCGCCGUUAC-UGgCGUUGa---AGCU- -5'
11918 3' -53.7 NC_003278.1 + 22224 0.68 0.547107
Target:  5'- uCGCCGaCGGCAcc--CCGCGGCggaUCGAg -3'
miRNA:   3'- -GUGGC-GCCGUuacuGGCGUUGa--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 4412 0.69 0.502951
Target:  5'- uCGCCGUcgaaggGGCGAccacggacGGCCGCAACaUCGAg -3'
miRNA:   3'- -GUGGCG------CCGUUa-------CUGGCGUUGaAGCU- -5'
11918 3' -53.7 NC_003278.1 + 17764 0.69 0.502951
Target:  5'- gCACCuGCaGCGAUGAuCCGCuguucgcCUUCGAg -3'
miRNA:   3'- -GUGG-CGcCGUUACU-GGCGuu-----GAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 10628 0.73 0.288808
Target:  5'- aCugCGCGGCAAgcagGGCCGUA--UUCGGc -3'
miRNA:   3'- -GugGCGCCGUUa---CUGGCGUugAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 2436 0.72 0.312225
Target:  5'- uGCUgGCGGCGGUGGCUGCGACgUUUGc -3'
miRNA:   3'- gUGG-CGCCGUUACUGGCGUUG-AAGCu -5'
11918 3' -53.7 NC_003278.1 + 28214 0.72 0.320344
Target:  5'- cCGCCGCcucggcccgGGCGuaccuggcccAUGcCCGCGGCUUCGAc -3'
miRNA:   3'- -GUGGCG---------CCGU----------UACuGGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 19185 0.71 0.363292
Target:  5'- cCGCCGaUGGCgAAUGACCuGCAGCUgcgCGu -3'
miRNA:   3'- -GUGGC-GCCG-UUACUGG-CGUUGAa--GCu -5'
11918 3' -53.7 NC_003278.1 + 31718 0.7 0.419867
Target:  5'- gACC-CGGCcggccuCCGCGACUUCGAg -3'
miRNA:   3'- gUGGcGCCGuuacu-GGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 10435 0.7 0.460418
Target:  5'- gCGCC-CGGcCAAUGGCUGaCAGCcUCGAg -3'
miRNA:   3'- -GUGGcGCC-GUUACUGGC-GUUGaAGCU- -5'
11918 3' -53.7 NC_003278.1 + 29759 0.7 0.460418
Target:  5'- gCGCCGCuGGC--UGACC-CAGCUgUCGAa -3'
miRNA:   3'- -GUGGCG-CCGuuACUGGcGUUGA-AGCU- -5'
11918 3' -53.7 NC_003278.1 + 7784 0.69 0.481457
Target:  5'- gCACCGcCGGC-GUGACCGaGGCgguccUCGAg -3'
miRNA:   3'- -GUGGC-GCCGuUACUGGCgUUGa----AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.