miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11918 3' -53.7 NC_003278.1 + 11935 0.66 0.684089
Target:  5'- -cCCGCGGCGAUGcCCaagGCAGCcagcCGGu -3'
miRNA:   3'- guGGCGCCGUUACuGG---CGUUGaa--GCU- -5'
11918 3' -53.7 NC_003278.1 + 23258 0.7 0.439876
Target:  5'- cCGCCGUGGguAUGACCGaccaGGCUgaugcccuuggCGAu -3'
miRNA:   3'- -GUGGCGCCguUACUGGCg---UUGAa----------GCU- -5'
11918 3' -53.7 NC_003278.1 + 22824 0.76 0.176541
Target:  5'- cCACCGCGuGUggUGGCgGCAACUggcugaggUCGAu -3'
miRNA:   3'- -GUGGCGC-CGuuACUGgCGUUGA--------AGCU- -5'
11918 3' -53.7 NC_003278.1 + 28328 1.09 0.000847
Target:  5'- uCACCGCGGCAAUGACCGCAACUUCGAg -3'
miRNA:   3'- -GUGGCGCCGUUACUGGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 27135 0.67 0.638306
Target:  5'- aCGCUGCGGCGGaagcgGgcGCCGCAGCgcUGGu -3'
miRNA:   3'- -GUGGCGCCGUUa----C--UGGCGUUGaaGCU- -5'
11918 3' -53.7 NC_003278.1 + 17121 0.67 0.626816
Target:  5'- aCGCCGuUGGCAcUGACUGCGccguACUgcUUGAg -3'
miRNA:   3'- -GUGGC-GCCGUuACUGGCGU----UGA--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 29216 0.67 0.603861
Target:  5'- --gCGgGGCAGUGGCCGCcGCcucUUGAg -3'
miRNA:   3'- gugGCgCCGUUACUGGCGuUGa--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 20632 0.67 0.603861
Target:  5'- aGCCGgcUGGCAGUGGCUGCGuuGCccguaaUCGAg -3'
miRNA:   3'- gUGGC--GCCGUUACUGGCGU--UGa-----AGCU- -5'
11918 3' -53.7 NC_003278.1 + 29500 0.67 0.592419
Target:  5'- cCACCgGCGGCA--GGCCGCccaugcGCUUCu- -3'
miRNA:   3'- -GUGG-CGCCGUuaCUGGCGu-----UGAAGcu -5'
11918 3' -53.7 NC_003278.1 + 15277 0.69 0.502951
Target:  5'- gGCCGUGGCGgugGUGACCGUcuccaGGCUcUGGc -3'
miRNA:   3'- gUGGCGCCGU---UACUGGCG-----UUGAaGCU- -5'
11918 3' -53.7 NC_003278.1 + 18286 0.67 0.581012
Target:  5'- aCGCCGC--CGAUGACCGCGcuauuggucgcgGCUUCa- -3'
miRNA:   3'- -GUGGCGccGUUACUGGCGU------------UGAAGcu -5'
11918 3' -53.7 NC_003278.1 + 7960 0.67 0.603861
Target:  5'- gGaaGCGGCAGUGACUGCGGgugUCa- -3'
miRNA:   3'- gUggCGCCGUUACUGGCGUUga-AGcu -5'
11918 3' -53.7 NC_003278.1 + 32829 0.66 0.672694
Target:  5'- cCACgGUGGCGcgGGuCCGCGACa---- -3'
miRNA:   3'- -GUGgCGCCGUuaCU-GGCGUUGaagcu -5'
11918 3' -53.7 NC_003278.1 + 5726 0.68 0.53594
Target:  5'- uCGCUGCGGuCGgccucgagcAUGACCauugGCAugUUCGAc -3'
miRNA:   3'- -GUGGCGCC-GU---------UACUGG----CGUugAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 29855 0.66 0.65438
Target:  5'- aGCCGCGGCGcUGguGCCGUugaagccgaucaucaGGCggUCGAg -3'
miRNA:   3'- gUGGCGCCGUuAC--UGGCG---------------UUGa-AGCU- -5'
11918 3' -53.7 NC_003278.1 + 32330 0.67 0.603861
Target:  5'- uGCCGaGGCccGUGGCUGCGAUcugUUCGAc -3'
miRNA:   3'- gUGGCgCCGu-UACUGGCGUUG---AAGCU- -5'
11918 3' -53.7 NC_003278.1 + 2979 0.68 0.524853
Target:  5'- uGCCgGCGcGCGcgGGCCGCGACagaGAa -3'
miRNA:   3'- gUGG-CGC-CGUuaCUGGCGUUGaagCU- -5'
11918 3' -53.7 NC_003278.1 + 23721 0.71 0.372347
Target:  5'- cCACCGCGGCGAUGguGCCGaGGCggaucagguucUCGAu -3'
miRNA:   3'- -GUGGCGCCGUUAC--UGGCgUUGa----------AGCU- -5'
11918 3' -53.7 NC_003278.1 + 3469 0.66 0.64979
Target:  5'- gGCCGCGGCucgccaGACgCGgGACguucUCGAa -3'
miRNA:   3'- gUGGCGCCGuua---CUG-GCgUUGa---AGCU- -5'
11918 3' -53.7 NC_003278.1 + 20708 0.67 0.615331
Target:  5'- uCGCCGUcggGGUAGUGACCGCcucGCUg--- -3'
miRNA:   3'- -GUGGCG---CCGUUACUGGCGu--UGAagcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.