miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 3' -55.2 NC_003278.1 + 2571 0.66 0.623938
Target:  5'- uGUCGuuGCGGcCGGCGGUauAGGUGAa- -3'
miRNA:   3'- gCAGUggUGCU-GUUGCCG--UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 20596 0.66 0.612635
Target:  5'- gGUCGCCGCGACccaguUGGacaaccucaaGGGCGAc- -3'
miRNA:   3'- gCAGUGGUGCUGuu---GCCg---------UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 13372 0.66 0.612635
Target:  5'- gCGUCGCguCGAC-ACGGUacucgagcacuuGGGCGGa- -3'
miRNA:   3'- -GCAGUGguGCUGuUGCCG------------UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 3470 0.66 0.60135
Target:  5'- gGUCGCCA-----GCGGUAuGGCGAUGc -3'
miRNA:   3'- gCAGUGGUgcuguUGCCGU-CCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 35076 0.66 0.60135
Target:  5'- uGUUGCCcugggACGGCAgguuugACGGCAGGCu--- -3'
miRNA:   3'- gCAGUGG-----UGCUGU------UGCCGUCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 12596 0.66 0.590092
Target:  5'- gGUgAUCugGAC-ACGGCucAGGCGGa- -3'
miRNA:   3'- gCAgUGGugCUGuUGCCG--UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 10021 0.66 0.586722
Target:  5'- gGUCGCCGuuguuccugaguucCGGC-ACGGC-GGCGAg- -3'
miRNA:   3'- gCAGUGGU--------------GCUGuUGCCGuCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 16677 0.66 0.578872
Target:  5'- aCGUCACCGCGACGAgcucgaGGUuGGUa--- -3'
miRNA:   3'- -GCAGUGGUGCUGUUg-----CCGuCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 7454 0.67 0.567698
Target:  5'- --cCGCCGCGAcCAGCGcUGGGCGAUc -3'
miRNA:   3'- gcaGUGGUGCU-GUUGCcGUCCGCUAc -5'
11924 3' -55.2 NC_003278.1 + 21105 0.67 0.567698
Target:  5'- --cCGCCACGACGGCGGCAauuGCc--- -3'
miRNA:   3'- gcaGUGGUGCUGUUGCCGUc--CGcuac -5'
11924 3' -55.2 NC_003278.1 + 12272 0.67 0.545525
Target:  5'- gGUCAuacCCACGGCGGCGucauacCGGGCGGc- -3'
miRNA:   3'- gCAGU---GGUGCUGUUGCc-----GUCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 8587 0.67 0.545525
Target:  5'- aCGUUGCCGCGGgAACGgaagaucaGCAGGCa--- -3'
miRNA:   3'- -GCAGUGGUGCUgUUGC--------CGUCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 22085 0.67 0.544423
Target:  5'- uCGUCGCCGCGAcCGAcgaacuggcgcgcCGGCuGGGCaccGAUGc -3'
miRNA:   3'- -GCAGUGGUGCU-GUU-------------GCCG-UCCG---CUAC- -5'
11924 3' -55.2 NC_003278.1 + 20541 0.67 0.534541
Target:  5'- gGUCACCGCGu--ACuGCccGGCGAUGu -3'
miRNA:   3'- gCAGUGGUGCuguUGcCGu-CCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 9003 0.67 0.534541
Target:  5'- gGUgACCugauCGugGGCGGCGagacGGCGGUa -3'
miRNA:   3'- gCAgUGGu---GCugUUGCCGU----CCGCUAc -5'
11924 3' -55.2 NC_003278.1 + 12046 0.67 0.523637
Target:  5'- uCG-CACCACcuaccGCGACGGCGcGGUGAUu -3'
miRNA:   3'- -GCaGUGGUGc----UGUUGCCGU-CCGCUAc -5'
11924 3' -55.2 NC_003278.1 + 32307 0.67 0.523637
Target:  5'- uGUCGCC--GACGGCGcGCAGGCu--- -3'
miRNA:   3'- gCAGUGGugCUGUUGC-CGUCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 32138 0.67 0.512819
Target:  5'- --cCACuCACGACuGCGGCgagcuGGGCGGUc -3'
miRNA:   3'- gcaGUG-GUGCUGuUGCCG-----UCCGCUAc -5'
11924 3' -55.2 NC_003278.1 + 17185 0.67 0.512819
Target:  5'- aCGcCGCCACuGugGugGuGCGGGUGAa- -3'
miRNA:   3'- -GCaGUGGUG-CugUugC-CGUCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 32336 0.67 0.512819
Target:  5'- -aUCGCCG-GGCAGCGGCAuGCGGc- -3'
miRNA:   3'- gcAGUGGUgCUGUUGCCGUcCGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.