Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11933 | 5' | -62.6 | NC_003278.1 | + | 22199 | 1.08 | 0.000121 |
Target: 5'- gUGCCCUCGACCAUGGGCCAGGCCGACc -3' miRNA: 3'- -ACGGGAGCUGGUACCCGGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9536 | 0.81 | 0.016008 |
Target: 5'- cGCCaaCUCGGCC-UGGGCCAGGCgGGCc -3' miRNA: 3'- aCGG--GAGCUGGuACCCGGUCCGgCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 21513 | 0.8 | 0.018545 |
Target: 5'- cGCCga-GGCCcUGGGCCAGGCCGGCc -3' miRNA: 3'- aCGGgagCUGGuACCCGGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9909 | 0.76 | 0.038545 |
Target: 5'- cGCaCUCGGCCca-GGCCAGGCCGAUa -3' miRNA: 3'- aCGgGAGCUGGuacCCGGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 21462 | 0.76 | 0.044571 |
Target: 5'- gGCCCagGGCCucggcgccGGCCAGGCCGGCc -3' miRNA: 3'- aCGGGagCUGGuac-----CCGGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 17096 | 0.75 | 0.048618 |
Target: 5'- cGUCUUCGGCgGUGGcuaCCAGGCCGAUg -3' miRNA: 3'- aCGGGAGCUGgUACCc--GGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 8156 | 0.75 | 0.050045 |
Target: 5'- cGCCCUCGcCCGUGuGCCcuGGCUGACc -3' miRNA: 3'- aCGGGAGCuGGUACcCGGu-CCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 22492 | 0.73 | 0.070681 |
Target: 5'- uUGCCgUCGACCGUGaGCCGGaacaCCGGCa -3' miRNA: 3'- -ACGGgAGCUGGUACcCGGUCc---GGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 14117 | 0.73 | 0.074199 |
Target: 5'- cGCCgUCGAUCGUcgccaggccguggcGGGCCAGGauguCCGGCg -3' miRNA: 3'- aCGGgAGCUGGUA--------------CCCGGUCC----GGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 11880 | 0.72 | 0.083863 |
Target: 5'- cUGCCUUgGgcaucGCCGcGGGCCGGcGCCGACc -3' miRNA: 3'- -ACGGGAgC-----UGGUaCCCGGUC-CGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 28066 | 0.71 | 0.096608 |
Target: 5'- gUGCCCUUGAUC--GGcGUCAGGCCGuACu -3' miRNA: 3'- -ACGGGAGCUGGuaCC-CGGUCCGGC-UG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 4148 | 0.71 | 0.099089 |
Target: 5'- aGaCCCUUcacucauggaagGACCGcgacggaUGGGaCCGGGCCGACa -3' miRNA: 3'- aC-GGGAG------------CUGGU-------ACCC-GGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 23240 | 0.7 | 0.11432 |
Target: 5'- cGCgCUCG-CCAgGGGCC-GGCCGGa -3' miRNA: 3'- aCGgGAGCuGGUaCCCGGuCCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 7806 | 0.7 | 0.11432 |
Target: 5'- gGUCCUCGAggcgaaCCAc-GGCCuGGCCGACc -3' miRNA: 3'- aCGGGAGCU------GGUacCCGGuCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 28290 | 0.7 | 0.117552 |
Target: 5'- aGCCg-CGGgCAUGGGCCagguacgcccGGGCCGAg -3' miRNA: 3'- aCGGgaGCUgGUACCCGG----------UCCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 3615 | 0.7 | 0.124275 |
Target: 5'- cGCCUUgaagaUGugCGcuUGGGCCuugcuGGCCGACa -3' miRNA: 3'- aCGGGA-----GCugGU--ACCCGGu----CCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 19959 | 0.69 | 0.135029 |
Target: 5'- gUGCCCagGGCCAguacuuccUGGGCCGcaCCGGCu -3' miRNA: 3'- -ACGGGagCUGGU--------ACCCGGUccGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 22491 | 0.69 | 0.146633 |
Target: 5'- cGCCCUgGACC-UGaccgacaaucgcGGCCucgAGGCCGAUc -3' miRNA: 3'- aCGGGAgCUGGuAC------------CCGG---UCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 6375 | 0.69 | 0.150699 |
Target: 5'- aUGCCCUgGugCG-GGGCaguGGCCGcCg -3' miRNA: 3'- -ACGGGAgCugGUaCCCGgu-CCGGCuG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9549 | 0.69 | 0.150699 |
Target: 5'- gGCCCUCGAggccgcccuuucCCGcgagcgccaGGcCCAGGCCGACc -3' miRNA: 3'- aCGGGAGCU------------GGUac-------CC-GGUCCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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