miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11933 5' -62.6 NC_003278.1 + 21627 0.66 0.24953
Target:  5'- gGCCaugcugggCGACC-UGGGCaagAGcGCCGGCg -3'
miRNA:   3'- aCGGga------GCUGGuACCCGg--UC-CGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 1308 0.67 0.202596
Target:  5'- aGCCCU-GGCCAcaaGGCCAGGCUu-- -3'
miRNA:   3'- aCGGGAgCUGGUac-CCGGUCCGGcug -5'
11933 5' -62.6 NC_003278.1 + 18678 0.67 0.215811
Target:  5'- gGCCaUCGGCC-UGuaaucccuucccgccGGCCcGGCCGGCg -3'
miRNA:   3'- aCGGgAGCUGGuAC---------------CCGGuCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 2542 0.66 0.225027
Target:  5'- cGCCCa-GGCCAgaucGGCguGGCCGGu -3'
miRNA:   3'- aCGGGagCUGGUac--CCGguCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 20266 0.66 0.239474
Target:  5'- gGCCCUgcucggcaacgcuggCGuCCA-GGGCagcauGGCCGGCa -3'
miRNA:   3'- aCGGGA---------------GCuGGUaCCCGgu---CCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 9854 0.66 0.24258
Target:  5'- gGCCU--GGCC-UGGGCCgagugcgccgcgaAGGUCGACa -3'
miRNA:   3'- aCGGGagCUGGuACCCGG-------------UCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 6819 0.66 0.243205
Target:  5'- aGCCC-CGGCCAacccGGGCaggugcaaGCCGGCa -3'
miRNA:   3'- aCGGGaGCUGGUa---CCCGguc-----CGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 9006 0.66 0.243205
Target:  5'- -aCCCUCGcCCggGcGGCUAuGCCGGCg -3'
miRNA:   3'- acGGGAGCuGGuaC-CCGGUcCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 18967 0.66 0.24953
Target:  5'- aGCCCgaGGCCAccggcaUGGaCCcGGCCGACc -3'
miRNA:   3'- aCGGGagCUGGU------ACCcGGuCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 2632 0.68 0.172601
Target:  5'- aGCCaucagCG-CC-UGGGCCAGGUCGGu -3'
miRNA:   3'- aCGGga---GCuGGuACCCGGUCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 33892 0.69 0.159139
Target:  5'- cGaCCUCG-CUggGGugacaGCCAGGCCGACa -3'
miRNA:   3'- aCgGGAGCuGGuaCC-----CGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 12345 0.69 0.154867
Target:  5'- cGCCCUCGcCCGcuUGGcacacauccGCCAGucgaucGCCGACa -3'
miRNA:   3'- aCGGGAGCuGGU--ACC---------CGGUC------CGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 8156 0.75 0.050045
Target:  5'- cGCCCUCGcCCGUGuGCCcuGGCUGACc -3'
miRNA:   3'- aCGGGAGCuGGUACcCGGu-CCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 11880 0.72 0.083863
Target:  5'- cUGCCUUgGgcaucGCCGcGGGCCGGcGCCGACc -3'
miRNA:   3'- -ACGGGAgC-----UGGUaCCCGGUC-CGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 7806 0.7 0.11432
Target:  5'- gGUCCUCGAggcgaaCCAc-GGCCuGGCCGACc -3'
miRNA:   3'- aCGGGAGCU------GGUacCCGGuCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 23240 0.7 0.11432
Target:  5'- cGCgCUCG-CCAgGGGCC-GGCCGGa -3'
miRNA:   3'- aCGgGAGCuGGUaCCCGGuCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 3615 0.7 0.124275
Target:  5'- cGCCUUgaagaUGugCGcuUGGGCCuugcuGGCCGACa -3'
miRNA:   3'- aCGGGA-----GCugGU--ACCCGGu----CCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 19959 0.69 0.135029
Target:  5'- gUGCCCagGGCCAguacuuccUGGGCCGcaCCGGCu -3'
miRNA:   3'- -ACGGGagCUGGU--------ACCCGGUccGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 22491 0.69 0.146633
Target:  5'- cGCCCUgGACC-UGaccgacaaucgcGGCCucgAGGCCGAUc -3'
miRNA:   3'- aCGGGAgCUGGuAC------------CCGG---UCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 9549 0.69 0.150699
Target:  5'- gGCCCUCGAggccgcccuuucCCGcgagcgccaGGcCCAGGCCGACc -3'
miRNA:   3'- aCGGGAGCU------------GGUac-------CC-GGUCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.