Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11933 | 5' | -62.6 | NC_003278.1 | + | 1308 | 0.67 | 0.202596 |
Target: 5'- aGCCCU-GGCCAcaaGGCCAGGCUu-- -3' miRNA: 3'- aCGGGAgCUGGUac-CCGGUCCGGcug -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 2542 | 0.66 | 0.225027 |
Target: 5'- cGCCCa-GGCCAgaucGGCguGGCCGGu -3' miRNA: 3'- aCGGGagCUGGUac--CCGguCCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 2632 | 0.68 | 0.172601 |
Target: 5'- aGCCaucagCG-CC-UGGGCCAGGUCGGu -3' miRNA: 3'- aCGGga---GCuGGuACCCGGUCCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 3615 | 0.7 | 0.124275 |
Target: 5'- cGCCUUgaagaUGugCGcuUGGGCCuugcuGGCCGACa -3' miRNA: 3'- aCGGGA-----GCugGU--ACCCGGu----CCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 4148 | 0.71 | 0.099089 |
Target: 5'- aGaCCCUUcacucauggaagGACCGcgacggaUGGGaCCGGGCCGACa -3' miRNA: 3'- aC-GGGAG------------CUGGU-------ACCC-GGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 4824 | 0.67 | 0.191614 |
Target: 5'- aGCgCCUCGGuacCCAggcuggcgGGggagucggugaugGCCAGGCCGACc -3' miRNA: 3'- aCG-GGAGCU---GGUa-------CC-------------CGGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 6271 | 0.68 | 0.177309 |
Target: 5'- aUGUUCUCGACCA-GGcaGCCgAGGCCGu- -3' miRNA: 3'- -ACGGGAGCUGGUaCC--CGG-UCCGGCug -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 6375 | 0.69 | 0.150699 |
Target: 5'- aUGCCCUgGugCG-GGGCaguGGCCGcCg -3' miRNA: 3'- -ACGGGAgCugGUaCCCGgu-CCGGCuG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 6819 | 0.66 | 0.243205 |
Target: 5'- aGCCC-CGGCCAacccGGGCaggugcaaGCCGGCa -3' miRNA: 3'- aCGGGaGCUGGUa---CCCGguc-----CGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 7806 | 0.7 | 0.11432 |
Target: 5'- gGUCCUCGAggcgaaCCAc-GGCCuGGCCGACc -3' miRNA: 3'- aCGGGAGCU------GGUacCCGGuCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 8066 | 0.66 | 0.24953 |
Target: 5'- cGCCgUCaACCGgaaGGGuuacgcCCAGGCCGAg -3' miRNA: 3'- aCGGgAGcUGGUa--CCC------GGUCCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 8156 | 0.75 | 0.050045 |
Target: 5'- cGCCCUCGcCCGUGuGCCcuGGCUGACc -3' miRNA: 3'- aCGGGAGCuGGUACcCGGu-CCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9006 | 0.66 | 0.243205 |
Target: 5'- -aCCCUCGcCCggGcGGCUAuGCCGGCg -3' miRNA: 3'- acGGGAGCuGGuaC-CCGGUcCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9536 | 0.81 | 0.016008 |
Target: 5'- cGCCaaCUCGGCC-UGGGCCAGGCgGGCc -3' miRNA: 3'- aCGG--GAGCUGGuACCCGGUCCGgCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9549 | 0.69 | 0.150699 |
Target: 5'- gGCCCUCGAggccgcccuuucCCGcgagcgccaGGcCCAGGCCGACc -3' miRNA: 3'- aCGGGAGCU------------GGUac-------CC-GGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9692 | 0.66 | 0.225027 |
Target: 5'- gGUCCUCGAUCAaGcguucgcggauGGCCAGcGCCuGGCg -3' miRNA: 3'- aCGGGAGCUGGUaC-----------CCGGUC-CGG-CUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9854 | 0.66 | 0.24258 |
Target: 5'- gGCCU--GGCC-UGGGCCgagugcgccgcgaAGGUCGACa -3' miRNA: 3'- aCGGGagCUGGuACCCGG-------------UCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9909 | 0.76 | 0.038545 |
Target: 5'- cGCaCUCGGCCca-GGCCAGGCCGAUa -3' miRNA: 3'- aCGgGAGCUGGuacCCGGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 11880 | 0.72 | 0.083863 |
Target: 5'- cUGCCUUgGgcaucGCCGcGGGCCGGcGCCGACc -3' miRNA: 3'- -ACGGGAgC-----UGGUaCCCGGUC-CGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 12337 | 0.69 | 0.154867 |
Target: 5'- cGCCCgguaugaCGccGCCGUGGGuaugaccgaCCAGGCUGAUg -3' miRNA: 3'- aCGGGa------GC--UGGUACCC---------GGUCCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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