Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11939 | 3' | -62.8 | NC_003278.1 | + | 2985 | 0.66 | 0.248262 |
Target: 5'- -uGGUGGCGCCuccggcgguACCGGGCgGCAaguuccGCGUGc -3' miRNA: 3'- ugUCGCCGUGG---------UGGUCCG-CGU------CGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 6361 | 0.67 | 0.196229 |
Target: 5'- gGCAGUGGcCGCCGCCucuugagcGGCGguCAcGCGCa -3' miRNA: 3'- -UGUCGCC-GUGGUGGu-------CCGC--GU-CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 19970 | 0.67 | 0.191075 |
Target: 5'- gACAGCGGCagggugcggGCCugUuGcCGCAGCGCc -3' miRNA: 3'- -UGUCGCCG---------UGGugGuCcGCGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 30317 | 1.07 | 0.000123 |
Target: 5'- gACAGCGGCACCACCAGGCGCAGCGCGu -3' miRNA: 3'- -UGUCGCCGUGGUGGUCCGCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 19614 | 0.66 | 0.23579 |
Target: 5'- -gAGcCGGCGuuGCUgAGGCGCGuGCGCa -3' miRNA: 3'- ugUC-GCCGUggUGG-UCCGCGU-CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 22963 | 0.66 | 0.232152 |
Target: 5'- cACGGUGGcCACCGcaucgaaguccucgcCCAGGCGUgucagcagguuGGCGuCGg -3' miRNA: 3'- -UGUCGCC-GUGGU---------------GGUCCGCG-----------UCGC-GC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 19226 | 0.66 | 0.229753 |
Target: 5'- uCGGCGGaacuCCGuacCCGGGCGCGuucGCGCc -3' miRNA: 3'- uGUCGCCgu--GGU---GGUCCGCGU---CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 7827 | 0.66 | 0.223848 |
Target: 5'- cCGGCGGUgcgaccguaguGCCGCCA-GCaCAGCGCc -3' miRNA: 3'- uGUCGCCG-----------UGGUGGUcCGcGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9123 | 0.66 | 0.217501 |
Target: 5'- gGCGGCGGUaucgucgaucugGCgagcguuCGCCAGGCGCuGGUGCn -3' miRNA: 3'- -UGUCGCCG------------UG-------GUGGUCCGCG-UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 16969 | 0.67 | 0.201504 |
Target: 5'- uGCAGUGGUuggaugacACUGCaCAGGCuGCcGCGCGc -3' miRNA: 3'- -UGUCGCCG--------UGGUG-GUCCG-CGuCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 21710 | 0.67 | 0.206901 |
Target: 5'- cCAG-GGCACCGau-GGCGCcGGCGCu -3' miRNA: 3'- uGUCgCCGUGGUgguCCGCG-UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8148 | 0.66 | 0.218071 |
Target: 5'- gACAGCaGGCGCgACCAGGCcuucagguccuGCuucGUGCc -3' miRNA: 3'- -UGUCG-CCGUGgUGGUCCG-----------CGu--CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8109 | 0.66 | 0.248262 |
Target: 5'- cCGGUGGC-CaGCCAGGCGCcgagcAGgGCa -3' miRNA: 3'- uGUCGCCGuGgUGGUCCGCG-----UCgCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 32073 | 0.67 | 0.20311 |
Target: 5'- uCAGCGGCACCgggucaucagcccauGCCucGCccaucagccagauGCAGCGCa -3' miRNA: 3'- uGUCGCCGUGG---------------UGGucCG-------------CGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 13898 | 0.66 | 0.248262 |
Target: 5'- uCAGCGaGCcgacgggcucgACCACgC-GGCGCAGgGCGc -3' miRNA: 3'- uGUCGC-CG-----------UGGUG-GuCCGCGUCgCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23208 | 0.66 | 0.223848 |
Target: 5'- -uGGCGGUcgCugUAGGUGUGGCGCa -3' miRNA: 3'- ugUCGCCGugGugGUCCGCGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23031 | 0.67 | 0.201504 |
Target: 5'- --uGCGGCAgCGCCAGGCcgcugGCAGUcuuGCc -3' miRNA: 3'- uguCGCCGUgGUGGUCCG-----CGUCG---CGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 19812 | 0.67 | 0.191075 |
Target: 5'- --cGCGcGUGCCGCCAugccggugccGGC-CAGCGCGg -3' miRNA: 3'- uguCGC-CGUGGUGGU----------CCGcGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 3063 | 0.66 | 0.23579 |
Target: 5'- cGCuGCGGCcguucggugAUCGCCAGGUGUGGCuggGCu -3' miRNA: 3'- -UGuCGCCG---------UGGUGGUCCGCGUCG---CGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 22471 | 0.66 | 0.229753 |
Target: 5'- aACAcCGGCACCggauaGCC-GGCGUcGCGCu -3' miRNA: 3'- -UGUcGCCGUGG-----UGGuCCGCGuCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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