Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11941 | 3' | -55.6 | NC_003278.1 | + | 8104 | 0.66 | 0.565259 |
Target: 5'- gGCCAGCCagGcGCCGA--GCAGGGc-- -3' miRNA: 3'- -CGGUCGGagU-CGGUUguUGUCCCacc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 7030 | 0.66 | 0.531984 |
Target: 5'- aUCGGCCcCgAGCCGGCGgggcGCGGGGUa- -3' miRNA: 3'- cGGUCGGaG-UCGGUUGU----UGUCCCAcc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 21528 | 0.66 | 0.543005 |
Target: 5'- gGCCGGCCU-GGCCGGCGcCgAGGcccUGGg -3' miRNA: 3'- -CGGUCGGAgUCGGUUGUuG-UCCc--ACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 20323 | 0.66 | 0.554099 |
Target: 5'- cGCCAGCgUU-GCCGA--GCAGGGccgUGGc -3' miRNA: 3'- -CGGUCGgAGuCGGUUguUGUCCC---ACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 33275 | 0.66 | 0.576477 |
Target: 5'- cGCCggcgauGGCCUCGGCCG-CAGCc-GGcGGa -3' miRNA: 3'- -CGG------UCGGAGUCGGUuGUUGucCCaCC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 29791 | 0.66 | 0.587745 |
Target: 5'- gGCCcGCCUUGGUCAucuuCGACGGGuccUGGc -3' miRNA: 3'- -CGGuCGGAGUCGGUu---GUUGUCCc--ACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 12771 | 0.66 | 0.565259 |
Target: 5'- aUCAGCCUCuGGCCGGaggauCAGCAGGc-GGa -3' miRNA: 3'- cGGUCGGAG-UCGGUU-----GUUGUCCcaCC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 12683 | 0.66 | 0.543005 |
Target: 5'- cGCCAucGaCCUCAGCCAguugccgccACcACAcGcGGUGGa -3' miRNA: 3'- -CGGU--C-GGAGUCGGU---------UGuUGU-C-CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 31533 | 0.67 | 0.48985 |
Target: 5'- gGCCAGCUacauggccaaccuggCGGCCAGgAaaacGCAGGGaGGg -3' miRNA: 3'- -CGGUCGGa--------------GUCGGUUgU----UGUCCCaCC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 28407 | 0.67 | 0.475103 |
Target: 5'- gGCCcGCUUCaAGCCGgGCGACAGcccgcgcggcgucuGGUGGu -3' miRNA: 3'- -CGGuCGGAG-UCGGU-UGUUGUC--------------CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 33171 | 0.67 | 0.467813 |
Target: 5'- aCCaAGCUcugCAGCgCGGCGAguucCAGGGUGGu -3' miRNA: 3'- cGG-UCGGa--GUCG-GUUGUU----GUCCCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 24415 | 0.67 | 0.521045 |
Target: 5'- aUUAGUg-CGGCC-GCAGCAGGGUGa -3' miRNA: 3'- cGGUCGgaGUCGGuUGUUGUCCCACc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 22996 | 0.67 | 0.500513 |
Target: 5'- aCCGGCCggcaggcagagcaggCAGCCGGCuuuCAcGGUGGc -3' miRNA: 3'- cGGUCGGa--------------GUCGGUUGuu-GUcCCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 32915 | 0.68 | 0.437247 |
Target: 5'- aCUGGCCUguGCCAugGGCAcuGGUGa -3' miRNA: 3'- cGGUCGGAguCGGUugUUGUc-CCACc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 8573 | 0.68 | 0.427315 |
Target: 5'- -aCGGaagaUCAGCaggcACAGCAGGGUGGc -3' miRNA: 3'- cgGUCgg--AGUCGgu--UGUUGUCCCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 29574 | 0.69 | 0.388969 |
Target: 5'- aGCCAGUC-CAGCCAcu--CGGGGcGGu -3' miRNA: 3'- -CGGUCGGaGUCGGUuguuGUCCCaCC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 21672 | 0.69 | 0.378826 |
Target: 5'- cCCAGCau-GGCCAGCAGCGGcuggucgaacgucGGUGGc -3' miRNA: 3'- cGGUCGgagUCGGUUGUUGUC-------------CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 5131 | 0.69 | 0.411707 |
Target: 5'- cCCGGgaCCaCAGCCAACAGCAGcggcccccggucaccGGUGGc -3' miRNA: 3'- cGGUC--GGaGUCGGUUGUUGUC---------------CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 23344 | 0.69 | 0.392701 |
Target: 5'- aGCaCAGCCUCAgcGCCGACGGCGGuuacaucaccagccuGGagcUGGa -3' miRNA: 3'- -CG-GUCGGAGU--CGGUUGUUGUC---------------CC---ACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 18752 | 0.69 | 0.379741 |
Target: 5'- cGCCGGCCg-GGCCGGCGGgaAGGGa-- -3' miRNA: 3'- -CGGUCGGagUCGGUUGUUg-UCCCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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