miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 29704 0.71 0.087874
Target:  5'- uGCCGGCaccGGCCUC-GCCgGUGGCCu -3'
miRNA:   3'- gCGGCCGcuaCCGGAGcCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 7830 0.71 0.087874
Target:  5'- aCGCCGGCGGUGcGaCCguaGuGCCGcCAGCa -3'
miRNA:   3'- -GCGGCCGCUAC-C-GGag-C-CGGC-GUCGg -5'
11941 5' -64.4 NC_003278.1 + 1604 0.71 0.089346
Target:  5'- gGCCGGCGAgcUGGUCgucgCGGCUGauguucuugauugAGCCg -3'
miRNA:   3'- gCGGCCGCU--ACCGGa---GCCGGCg------------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 14914 0.71 0.09034
Target:  5'- gGCCGGUaGUaGCC-CGGCCGCguucAGCCu -3'
miRNA:   3'- gCGGCCGcUAcCGGaGCCGGCG----UCGG- -5'
11941 5' -64.4 NC_003278.1 + 21519 0.71 0.095468
Target:  5'- gGCCGGCGccgaGGcCCUgGGCCaggcCGGCCa -3'
miRNA:   3'- gCGGCCGCua--CC-GGAgCCGGc---GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19798 0.7 0.097328
Target:  5'- uGCCGGUGccGGCCagcgCGgcagcgcucuggauGCCGCGGCUg -3'
miRNA:   3'- gCGGCCGCuaCCGGa---GC--------------CGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 14236 0.7 0.098135
Target:  5'- gCGcCCGGCGAgacGGCugaccccaucccCUCGGCCGCucAGaCCa -3'
miRNA:   3'- -GC-GGCCGCUa--CCG------------GAGCCGGCG--UC-GG- -5'
11941 5' -64.4 NC_003278.1 + 32352 0.7 0.099222
Target:  5'- gGCCGGCGGcgucgauaucgccgGGCagCGGCaUGCGGCCg -3'
miRNA:   3'- gCGGCCGCUa-------------CCGgaGCCG-GCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21594 0.7 0.100872
Target:  5'- gGCCGGCGAcaGCCUgaCGGCCcGCgcugaccaGGCCu -3'
miRNA:   3'- gCGGCCGCUacCGGA--GCCGG-CG--------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 19540 0.7 0.103681
Target:  5'- -aCCGGCuucacgGAUGGCC-CGGuuGUAGUCg -3'
miRNA:   3'- gcGGCCG------CUACCGGaGCCggCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 26 0.7 0.103681
Target:  5'- gCGCCGGCGaAUGaGCCgaugCGGCCaGgAaacGCCa -3'
miRNA:   3'- -GCGGCCGC-UAC-CGGa---GCCGG-CgU---CGG- -5'
11941 5' -64.4 NC_003278.1 + 19030 0.7 0.106563
Target:  5'- gGCCGGguccaugcCGGUGGCCUCGGgCuCGGUg -3'
miRNA:   3'- gCGGCC--------GCUACCGGAGCCgGcGUCGg -5'
11941 5' -64.4 NC_003278.1 + 6194 0.7 0.106563
Target:  5'- aCGUCGuCGAggacuacGGCCUCGGCUGCcuGGUCg -3'
miRNA:   3'- -GCGGCcGCUa------CCGGAGCCGGCG--UCGG- -5'
11941 5' -64.4 NC_003278.1 + 5049 0.7 0.112555
Target:  5'- uGCuCGGCGAUcgcuucgacGGCCUCG-CCGaccuGGCCg -3'
miRNA:   3'- gCG-GCCGCUA---------CCGGAGCcGGCg---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 22822 0.7 0.115668
Target:  5'- gCGCCGGCGcuggcgGGCCUgcCGaucCUGCAGCUg -3'
miRNA:   3'- -GCGGCCGCua----CCGGA--GCc--GGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21789 0.69 0.118861
Target:  5'- gGCCGGCGcgGGCagCGacaCCGCAGaCCu -3'
miRNA:   3'- gCGGCCGCuaCCGgaGCc--GGCGUC-GG- -5'
11941 5' -64.4 NC_003278.1 + 22060 0.69 0.122136
Target:  5'- gCGCCGGCug-GGCaccgaugCGGCUGCuGCUg -3'
miRNA:   3'- -GCGGCCGcuaCCGga-----GCCGGCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 14631 0.69 0.122136
Target:  5'- gGCCGGCaacGGCCuggUCGGCgGUGGCg -3'
miRNA:   3'- gCGGCCGcuaCCGG---AGCCGgCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 6699 0.69 0.128938
Target:  5'- gGCCucGGCGAUcuCUUCGGCgaugaCGCAGCCg -3'
miRNA:   3'- gCGG--CCGCUAccGGAGCCG-----GCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 7446 0.69 0.132469
Target:  5'- cCGCUGGUGGUGGUgUCGuaccaGCgGUAGCg -3'
miRNA:   3'- -GCGGCCGCUACCGgAGC-----CGgCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.