Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 2339 | 0.66 | 0.22416 |
Target: 5'- gGCCgaacgGGCGGUGGUa-CGaGCCGCcGCUg -3' miRNA: 3'- gCGG-----CCGCUACCGgaGC-CGGCGuCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 16884 | 0.68 | 0.164071 |
Target: 5'- aCGCCaucuGCGAagagGGCUUCGaGCCaguccgguGCGGCCg -3' miRNA: 3'- -GCGGc---CGCUa---CCGGAGC-CGG--------CGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 25528 | 0.68 | 0.155587 |
Target: 5'- uGuuG-CGGUGGCugaCUCGGCCGCccaGGUCg -3' miRNA: 3'- gCggCcGCUACCG---GAGCCGGCG---UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 33276 | 1.11 | 0.00005 |
Target: 5'- aCGCCGGCGAUGGCCUCGGCCGCAGCCg -3' miRNA: 3'- -GCGGCCGCUACCGGAGCCGGCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 17379 | 0.66 | 0.200208 |
Target: 5'- aCGCCGaggaugcGCGGUaccacgcccaagcgGGCCUUGGCgGCaagcaaGGCCu -3' miRNA: 3'- -GCGGC-------CGCUA--------------CCGGAGCCGgCG------UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 11137 | 0.66 | 0.19712 |
Target: 5'- uGCCGGCGA-GGUUgcaGGCaauGCAGUUg -3' miRNA: 3'- gCGGCCGCUaCCGGag-CCGg--CGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 21369 | 0.67 | 0.192065 |
Target: 5'- aGCCGGCGAgcaGGCCguucaccaGGCCcuggacgaucauGUuGCCg -3' miRNA: 3'- gCGGCCGCUa--CCGGag------CCGG------------CGuCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 33012 | 0.67 | 0.189087 |
Target: 5'- gCGCCGGCGGauUGGUCgaacccaacuacGCCGUaguGGCCg -3' miRNA: 3'- -GCGGCCGCU--ACCGGagc---------CGGCG---UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 14949 | 0.67 | 0.182296 |
Target: 5'- aGCCGGC--UGGCagUGGCUGCGuuGCCc -3' miRNA: 3'- gCGGCCGcuACCGgaGCCGGCGU--CGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 21750 | 0.67 | 0.17297 |
Target: 5'- uCGauGGUGAUGGCCUgcGCCGgGGCg -3' miRNA: 3'- -GCggCCGCUACCGGAgcCGGCgUCGg -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 10429 | 0.67 | 0.177579 |
Target: 5'- uCGgCGGCGucca-CUCGGCCaGCAGCUc -3' miRNA: 3'- -GCgGCCGCuaccgGAGCCGG-CGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 22360 | 0.67 | 0.182296 |
Target: 5'- uGCCGGCGGUaccgaGGaCCgagccgagcagaUCGG-UGCGGCCg -3' miRNA: 3'- gCGGCCGCUA-----CC-GG------------AGCCgGCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 13938 | 0.66 | 0.216286 |
Target: 5'- aCGCCGGCGggGgucuguuGCCaccacucgaggaugUCGGUCaGCgAGCCg -3' miRNA: 3'- -GCGGCCGCuaC-------CGG--------------AGCCGG-CG-UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 23478 | 0.67 | 0.177579 |
Target: 5'- cCGCCGGUGucgucGGCCa-GGUCGCuGaCCa -3' miRNA: 3'- -GCGGCCGCua---CCGGagCCGGCGuC-GG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 7511 | 0.66 | 0.212984 |
Target: 5'- uCGCCcaGCGcUGGUCgCGGCgGUAGUCg -3' miRNA: 3'- -GCGGc-CGCuACCGGaGCCGgCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 18743 | 0.67 | 0.182296 |
Target: 5'- gGCCGGCGGgaagGGauuacaGGCCGaUGGCCu -3' miRNA: 3'- gCGGCCGCUa---CCggag--CCGGC-GUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 31683 | 0.67 | 0.177579 |
Target: 5'- aGCCuGCGGcgccGCCgcccaGGCCGCAGCa -3' miRNA: 3'- gCGGcCGCUac--CGGag---CCGGCGUCGg -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 9759 | 0.68 | 0.155587 |
Target: 5'- aGCCGGCGAgcaacaucaGGCagaGGCUGguCAGCCc -3' miRNA: 3'- gCGGCCGCUa--------CCGgagCCGGC--GUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 17295 | 0.66 | 0.20229 |
Target: 5'- aCGCCGcCGAUGaCCgcgcuaUUGGUCGCGGCUu -3' miRNA: 3'- -GCGGCcGCUACcGG------AGCCGGCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 18571 | 0.66 | 0.196609 |
Target: 5'- gGCUGGgcgucacccauuuCGAUGGUCUCGuGCCG--GCCg -3' miRNA: 3'- gCGGCC-------------GCUACCGGAGC-CGGCguCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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