miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11942 5' -49.9 NC_003278.1 + 9621 0.66 0.87224
Target:  5'- gGGCcuGGC--GCUCgcggGAAAGgGCGGCCUc -3'
miRNA:   3'- -CCG--CCGuuCGAGa---UUUUCgUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 30929 0.68 0.763957
Target:  5'- aGCGGUggGCUUggccguuGUACAGgCCg -3'
miRNA:   3'- cCGCCGuuCGAGauuuu--CGUGUUgGG- -5'
11942 5' -49.9 NC_003278.1 + 31863 0.68 0.751791
Target:  5'- cGGCGGgAGGCUCcguuccaUGGAAGCGgAugUa -3'
miRNA:   3'- -CCGCCgUUCGAG-------AUUUUCGUgUugGg -5'
11942 5' -49.9 NC_003278.1 + 20751 0.84 0.100824
Target:  5'- cGGCGGCGAGCUC-----GCGCAGCCa -3'
miRNA:   3'- -CCGCCGUUCGAGauuuuCGUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 16917 0.66 0.85474
Target:  5'- aGGCGGgAAGCUUguacggcguGAAGCuACAagACgCCa -3'
miRNA:   3'- -CCGCCgUUCGAGau-------UUUCG-UGU--UG-GG- -5'
11942 5' -49.9 NC_003278.1 + 19484 0.66 0.845581
Target:  5'- cGGCGGC-GGCcaucugCUGAGccAGUGCuuucACCCg -3'
miRNA:   3'- -CCGCCGuUCGa-----GAUUU--UCGUGu---UGGG- -5'
11942 5' -49.9 NC_003278.1 + 4372 0.66 0.841843
Target:  5'- aGgGGCAuGUUCgggacgcgcGCGCGGCCCa -3'
miRNA:   3'- cCgCCGUuCGAGauuuu----CGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 6077 0.67 0.826493
Target:  5'- cGGCGGCAGGC-CgcccauGCGCuuCUg -3'
miRNA:   3'- -CCGCCGUUCGaGauuuu-CGUGuuGGg -5'
11942 5' -49.9 NC_003278.1 + 14016 0.67 0.816588
Target:  5'- aGGCGcuCGAGCUC---GAGCACggUCUc -3'
miRNA:   3'- -CCGCc-GUUCGAGauuUUCGUGuuGGG- -5'
11942 5' -49.9 NC_003278.1 + 22994 0.68 0.763957
Target:  5'- cGGcCGGCAGGC----AGAGCagGCAGCCg -3'
miRNA:   3'- -CC-GCCGUUCGagauUUUCG--UGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 8800 0.67 0.803378
Target:  5'- gGGCGGcCAGGgUCUucGGGCcagcgaugccaucgGCGACCa -3'
miRNA:   3'- -CCGCC-GUUCgAGAuuUUCG--------------UGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 9757 0.67 0.826493
Target:  5'- -cCGGCGAGCaacaUCaggcAGAGGCugguCAGCCCa -3'
miRNA:   3'- ccGCCGUUCG----AGa---UUUUCGu---GUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 23861 0.66 0.87224
Target:  5'- gGGCGGCAAcaUCgcuGAGUAgCGugCCg -3'
miRNA:   3'- -CCGCCGUUcgAGauuUUCGU-GUugGG- -5'
11942 5' -49.9 NC_003278.1 + 32298 0.67 0.791924
Target:  5'- cGGCGcGCAGGCUCUucuucucCGGCUCg -3'
miRNA:   3'- -CCGC-CGUUCGAGAuuuucguGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 27923 0.66 0.87224
Target:  5'- gGGCGGUccucgaggauGcGCUUgcc--GCGCAGCCCc -3'
miRNA:   3'- -CCGCCG----------UuCGAGauuuuCGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 34435 0.67 0.826493
Target:  5'- gGGCGGaAGGCgUCUGGuuAGCuuGGCCUg -3'
miRNA:   3'- -CCGCCgUUCG-AGAUUu-UCGugUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 20299 0.68 0.773771
Target:  5'- uGGCGGUggugaccgucuccAGGCUCUGGccGUacucGCGGCCg -3'
miRNA:   3'- -CCGCCG-------------UUCGAGAUUuuCG----UGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 10559 0.68 0.762859
Target:  5'- gGGCaGCAcgagggccuGGCUC-GAGGGCGCGgagaaucggcccuGCCCa -3'
miRNA:   3'- -CCGcCGU---------UCGAGaUUUUCGUGU-------------UGGG- -5'
11942 5' -49.9 NC_003278.1 + 8165 0.66 0.86363
Target:  5'- aGGuCGGCAggaucAGCgacagcAGGCGCGACCa -3'
miRNA:   3'- -CC-GCCGU-----UCGagauu-UUCGUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 6435 0.66 0.845581
Target:  5'- aGGCGGCu-GCgaucCUGAuacagcugggcGAGCuGCAGCUCa -3'
miRNA:   3'- -CCGCCGuuCGa---GAUU-----------UUCG-UGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.