miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 2930 1.11 0.0001
Target:  5'- gGUACCGCCGGAGGCGCCACCACCACCa -3'
miRNA:   3'- -CAUGGCGGCCUCCGCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 26823 0.84 0.014177
Target:  5'- uGUA-CGCCaGGGGCGUCGCCACCGCCa -3'
miRNA:   3'- -CAUgGCGGcCUCCGCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6624 0.78 0.036072
Target:  5'- cGUACCGCCGGcuGCGUCAUCGCCgaagagaucGCCg -3'
miRNA:   3'- -CAUGGCGGCCucCGCGGUGGUGG---------UGG- -5'
11946 5' -61.6 NC_003278.1 + 13264 0.77 0.048163
Target:  5'- gGU-CCGCCGG-GGCGCUGCCGuuGCCc -3'
miRNA:   3'- -CAuGGCGGCCuCCGCGGUGGUggUGG- -5'
11946 5' -61.6 NC_003278.1 + 15917 0.77 0.048163
Target:  5'- -cGCCGCCGGcggucuguacuGGCGCUGCCGCUACa -3'
miRNA:   3'- caUGGCGGCCu----------CCGCGGUGGUGGUGg -5'
11946 5' -61.6 NC_003278.1 + 31864 0.76 0.052506
Target:  5'- -cGCCGCCGGcGGGCGCCgACCGgaUGCCg -3'
miRNA:   3'- caUGGCGGCC-UCCGCGG-UGGUg-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 23504 0.76 0.053882
Target:  5'- -cACCGCgGGAGaccagagcaagccGCGCCGCCugCGCUa -3'
miRNA:   3'- caUGGCGgCCUC-------------CGCGGUGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 16571 0.76 0.054036
Target:  5'- -gACaGCCGGucGCcacGCCACCACCACCu -3'
miRNA:   3'- caUGgCGGCCucCG---CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6296 0.75 0.060603
Target:  5'- -gACCGCCGcucaaGAGGCgGCgGCCACUGCCc -3'
miRNA:   3'- caUGGCGGC-----CUCCG-CGgUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 32599 0.75 0.062362
Target:  5'- -cGCCGCUGGAccgacaccucgGGCGCCAUCAUCGgCg -3'
miRNA:   3'- caUGGCGGCCU-----------CCGCGGUGGUGGUgG- -5'
11946 5' -61.6 NC_003278.1 + 12479 0.75 0.06417
Target:  5'- --cCCGCCuGcAGGUcuauGCCGCCACCGCCa -3'
miRNA:   3'- cauGGCGGcC-UCCG----CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 14761 0.75 0.066028
Target:  5'- -gACCGCaCGGuAGGUGCCGgCACCcacGCCg -3'
miRNA:   3'- caUGGCG-GCC-UCCGCGGUgGUGG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 17048 0.75 0.067939
Target:  5'- -cACCGCCGaAGaCGCCgacGCCACCGCCu -3'
miRNA:   3'- caUGGCGGCcUCcGCGG---UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 14285 0.75 0.071921
Target:  5'- cGUcUCGCCGGGcGCGCCGCCGgcgUCACCg -3'
miRNA:   3'- -CAuGGCGGCCUcCGCGGUGGU---GGUGG- -5'
11946 5' -61.6 NC_003278.1 + 2109 0.74 0.079885
Target:  5'- aUGCCGCUGcAGGCGCCGCUggccaaguacaugcGCCGCg -3'
miRNA:   3'- cAUGGCGGCcUCCGCGGUGG--------------UGGUGg -5'
11946 5' -61.6 NC_003278.1 + 13937 0.74 0.080566
Target:  5'- -cGCCGgCGGGGGUcuGUUGCCACCACUc -3'
miRNA:   3'- caUGGCgGCCUCCG--CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8813 0.74 0.082878
Target:  5'- -cGCCGCCGGAGcuCGCCucgACCuGCCGCUg -3'
miRNA:   3'- caUGGCGGCCUCc-GCGG---UGG-UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 7382 0.74 0.085254
Target:  5'- cUACCGCUGGua-CGaCACCACCACCa -3'
miRNA:   3'- cAUGGCGGCCuccGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 23008 0.73 0.092774
Target:  5'- --cCCGCCaGGAuGGCGaCCAgCACCGCUa -3'
miRNA:   3'- cauGGCGG-CCU-CCGC-GGUgGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 28713 0.73 0.095418
Target:  5'- -cACCGCCGGguguaccuguGGGCGCCGgguucguuguCCAgCGCCc -3'
miRNA:   3'- caUGGCGGCC----------UCCGCGGU----------GGUgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.