miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 610 0.73 0.098133
Target:  5'- cGUACUGCCccaacaGGGUGCUACCGCCGuCCu -3'
miRNA:   3'- -CAUGGCGGcc----UCCGCGGUGGUGGU-GG- -5'
11946 5' -61.6 NC_003278.1 + 1128 0.66 0.292974
Target:  5'- -cGCUGCUauGGaAGGUGCCugugGCUugCGCCa -3'
miRNA:   3'- caUGGCGG--CC-UCCGCGG----UGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 2109 0.74 0.079885
Target:  5'- aUGCCGCUGcAGGCGCCGCUggccaaguacaugcGCCGCg -3'
miRNA:   3'- cAUGGCGGCcUCCGCGGUGG--------------UGGUGg -5'
11946 5' -61.6 NC_003278.1 + 2522 0.71 0.133191
Target:  5'- -gGCCGCaUGGAGauuuucggaugaGCaaacgucgcaGCCACCGCCGCCa -3'
miRNA:   3'- caUGGCG-GCCUC------------CG----------CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 2930 1.11 0.0001
Target:  5'- gGUACCGCCGGAGGCGCCACCACCACCa -3'
miRNA:   3'- -CAUGGCGGCCUCCGCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 3286 0.66 0.315323
Target:  5'- -gACCGCaucuGGCGCCAgaucgUCACCAUCc -3'
miRNA:   3'- caUGGCGgccuCCGCGGU-----GGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 4413 0.66 0.300284
Target:  5'- -cGCCGUCGaaGGGGCGaCCACgGaCgGCCg -3'
miRNA:   3'- caUGGCGGC--CUCCGC-GGUGgU-GgUGG- -5'
11946 5' -61.6 NC_003278.1 + 5234 0.67 0.245679
Target:  5'- -aGCaGUCGGucaGGGCGaCACUGCCGCCa -3'
miRNA:   3'- caUGgCGGCC---UCCGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 5505 0.69 0.174732
Target:  5'- gGUACgGCUGGcgauGGUGCCGCUGaCGCCg -3'
miRNA:   3'- -CAUGgCGGCCu---CCGCGGUGGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6034 0.66 0.315323
Target:  5'- cUGCCGCCGGuGGaaguGCC-CUACgUGCCc -3'
miRNA:   3'- cAUGGCGGCCuCCg---CGGuGGUG-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 6105 0.7 0.161184
Target:  5'- cUACUGgcagaUCGGcGGuCGCCGCCGCUACCu -3'
miRNA:   3'- cAUGGC-----GGCCuCC-GCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6296 0.75 0.060603
Target:  5'- -gACCGCCGcucaaGAGGCgGCgGCCACUGCCc -3'
miRNA:   3'- caUGGCGGC-----CUCCG-CGgUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6375 0.68 0.22743
Target:  5'- aUGCC-CUGGugcgGGGCaGUgGCCGCCGCCu -3'
miRNA:   3'- cAUGGcGGCC----UCCG-CGgUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6479 0.7 0.148589
Target:  5'- cGUGCUgcagGCCGGcaaGGGCGCCcaggacgaggugGUCACCACCg -3'
miRNA:   3'- -CAUGG----CGGCC---UCCGCGG------------UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6624 0.78 0.036072
Target:  5'- cGUACCGCCGGcuGCGUCAUCGCCgaagagaucGCCg -3'
miRNA:   3'- -CAUGGCGGCCucCGCGGUGGUGG---------UGG- -5'
11946 5' -61.6 NC_003278.1 + 7333 0.66 0.292974
Target:  5'- uGUAuCUGCgCGcAGuGCagucuGCCACCGCCGCCg -3'
miRNA:   3'- -CAU-GGCG-GCcUC-CG-----CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 7382 0.74 0.085254
Target:  5'- cUACCGCUGGua-CGaCACCACCACCa -3'
miRNA:   3'- cAUGGCGGCCuccGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 7785 0.67 0.250109
Target:  5'- -cACCGCCGGcgugaccgAGGCGguccucgaggcgaaCCACgGCCugGCCg -3'
miRNA:   3'- caUGGCGGCC--------UCCGC--------------GGUGgUGG--UGG- -5'
11946 5' -61.6 NC_003278.1 + 7830 0.71 0.133191
Target:  5'- ---aCGCCGGcGGUGCgACCguaguGCCGCCa -3'
miRNA:   3'- caugGCGGCCuCCGCGgUGG-----UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 7971 0.66 0.315323
Target:  5'- -cACCGCCacGGccGCGCCAUCAUgGgCCu -3'
miRNA:   3'- caUGGCGG--CCucCGCGGUGGUGgU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.