miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 14691 0.7 0.144594
Target:  5'- -aGCCuCCGGcguGGGUGCCGgCACCuACCg -3'
miRNA:   3'- caUGGcGGCC---UCCGCGGUgGUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 7382 0.74 0.085254
Target:  5'- cUACCGCUGGua-CGaCACCACCACCa -3'
miRNA:   3'- cAUGGCGGCCuccGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 23008 0.73 0.092774
Target:  5'- --cCCGCCaGGAuGGCGaCCAgCACCGCUa -3'
miRNA:   3'- cauGGCGG-CCU-CCGC-GGUgGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 29826 0.72 0.109739
Target:  5'- -aGCCgcGCCGGcGGCGCCGCCAaguCCu -3'
miRNA:   3'- caUGG--CGGCCuCCGCGGUGGUgguGG- -5'
11946 5' -61.6 NC_003278.1 + 23166 0.71 0.122283
Target:  5'- -gACCGCCaGAGcgcccugcGCGCCGCCcgcgccgaguggaACCGCCu -3'
miRNA:   3'- caUGGCGGcCUC--------CGCGGUGG-------------UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 33206 0.71 0.126055
Target:  5'- gGUuCCGCCGGcuGCgGCCgagGCCAUCGCCg -3'
miRNA:   3'- -CAuGGCGGCCucCG-CGG---UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 20229 0.71 0.136522
Target:  5'- aGUACgGCCagagccuGGAGaCgGUCACCACCGCCa -3'
miRNA:   3'- -CAUGgCGG-------CCUCcG-CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 16727 0.71 0.136897
Target:  5'- aGUACCaggcGCUGcAGGCG-UACCGCCGCCa -3'
miRNA:   3'- -CAUGG----CGGCcUCCGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 10368 0.71 0.140697
Target:  5'- -aGCUGCUGGccgaguGGaCGCCGCCGaagcCCACCg -3'
miRNA:   3'- caUGGCGGCCu-----CC-GCGGUGGU----GGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8813 0.74 0.082878
Target:  5'- -cGCCGCCGGAGcuCGCCucgACCuGCCGCUg -3'
miRNA:   3'- caUGGCGGCCUCc-GCGG---UGG-UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 17048 0.75 0.067939
Target:  5'- -cACCGCCGaAGaCGCCgacGCCACCGCCu -3'
miRNA:   3'- caUGGCGGCcUCcGCGG---UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 12479 0.75 0.06417
Target:  5'- --cCCGCCuGcAGGUcuauGCCGCCACCGCCa -3'
miRNA:   3'- cauGGCGGcC-UCCG----CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 26823 0.84 0.014177
Target:  5'- uGUA-CGCCaGGGGCGUCGCCACCGCCa -3'
miRNA:   3'- -CAUgGCGGcCUCCGCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6624 0.78 0.036072
Target:  5'- cGUACCGCCGGcuGCGUCAUCGCCgaagagaucGCCg -3'
miRNA:   3'- -CAUGGCGGCCucCGCGGUGGUGG---------UGG- -5'
11946 5' -61.6 NC_003278.1 + 15917 0.77 0.048163
Target:  5'- -cGCCGCCGGcggucuguacuGGCGCUGCCGCUACa -3'
miRNA:   3'- caUGGCGGCCu----------CCGCGGUGGUGGUGg -5'
11946 5' -61.6 NC_003278.1 + 31864 0.76 0.052506
Target:  5'- -cGCCGCCGGcGGGCGCCgACCGgaUGCCg -3'
miRNA:   3'- caUGGCGGCC-UCCGCGG-UGGUg-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 23504 0.76 0.053882
Target:  5'- -cACCGCgGGAGaccagagcaagccGCGCCGCCugCGCUa -3'
miRNA:   3'- caUGGCGgCCUC-------------CGCGGUGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 16571 0.76 0.054036
Target:  5'- -gACaGCCGGucGCcacGCCACCACCACCu -3'
miRNA:   3'- caUGgCGGCCucCG---CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6296 0.75 0.060603
Target:  5'- -gACCGCCGcucaaGAGGCgGCgGCCACUGCCc -3'
miRNA:   3'- caUGGCGGC-----CUCCG-CGgUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 32599 0.75 0.062362
Target:  5'- -cGCCGCUGGAccgacaccucgGGCGCCAUCAUCGgCg -3'
miRNA:   3'- caUGGCGGCCU-----------CCGCGGUGGUGGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.