miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 5' -61.4 NC_003278.1 + 34387 0.68 0.232196
Target:  5'- cGCCggGGCCAguaGCUGGacCUUCCUCGUCg -3'
miRNA:   3'- -CGGa-CCGGUag-UGGCU--GAGGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 33221 0.73 0.107559
Target:  5'- gGCCgaGGCCAUCGCCGGCgugaugggcaccaCCCUGUUg -3'
miRNA:   3'- -CGGa-CCGGUAGUGGCUGag-----------GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 33028 0.66 0.312045
Target:  5'- cGCaCUGGCCGacaccgCGCCGGCggauuggucgaaCCCaacuaCGCCg -3'
miRNA:   3'- -CG-GACCGGUa-----GUGGCUGa-----------GGGg----GCGG- -5'
11951 5' -61.4 NC_003278.1 + 32642 0.72 0.109368
Target:  5'- cGCCcGGCCAagGCaCGuACUCCgUCGCCg -3'
miRNA:   3'- -CGGaCCGGUagUG-GC-UGAGGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 32307 0.66 0.313563
Target:  5'- cGCCgccGGCCcgaugCACCGugUgccaUCCCUGCa -3'
miRNA:   3'- -CGGa--CCGGua---GUGGCugA----GGGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 32251 0.76 0.060491
Target:  5'- aGCCUGcgcGCCGUCGgCGACaUCCUCgGCCg -3'
miRNA:   3'- -CGGAC---CGGUAGUgGCUG-AGGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 31745 0.7 0.169354
Target:  5'- cGCCUGGCCgguGUC-CCGGgcaCCCUGCUg -3'
miRNA:   3'- -CGGACCGG---UAGuGGCUgagGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 31128 0.66 0.32124
Target:  5'- cCCUGGCCca-GCgGACaaaCaCCCGCCu -3'
miRNA:   3'- cGGACCGGuagUGgCUGag-G-GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 30111 0.67 0.27727
Target:  5'- uGCUgaUGGCCAUCcgcGCCGAggCCCgCGUg -3'
miRNA:   3'- -CGG--ACCGGUAG---UGGCUgaGGGgGCGg -5'
11951 5' -61.4 NC_003278.1 + 29787 0.69 0.188404
Target:  5'- cGCCuUGGUCAUCuuCGACgggUCCUgGCCu -3'
miRNA:   3'- -CGG-ACCGGUAGugGCUGa--GGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 28193 0.66 0.306026
Target:  5'- cGCC-GGCC---ACCGACaaggaaCCCgCCGCCu -3'
miRNA:   3'- -CGGaCCGGuagUGGCUGa-----GGG-GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 27118 0.71 0.152047
Target:  5'- cGCuCUGcggcGCCAccuUCACCGGCUCCCUgaGCUg -3'
miRNA:   3'- -CG-GAC----CGGU---AGUGGCUGAGGGGg-CGG- -5'
11951 5' -61.4 NC_003278.1 + 21698 0.7 0.16049
Target:  5'- cGCa-GGCCAUCACCaucGACaaccgUCCCCCGgUCa -3'
miRNA:   3'- -CGgaCCGGUAGUGG---CUG-----AGGGGGC-GG- -5'
11951 5' -61.4 NC_003278.1 + 21584 0.7 0.178654
Target:  5'- aGCCUgacGGCCcgCGCUGACcaggCCUUgGCCg -3'
miRNA:   3'- -CGGA---CCGGuaGUGGCUGa---GGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 21538 0.66 0.28922
Target:  5'- gGCCgucaGGCUGUCGCCGGCcucgacggggaguuUgcccgaggCUCCCGCCc -3'
miRNA:   3'- -CGGa---CCGGUAGUGGCUG--------------A--------GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 21524 0.77 0.053953
Target:  5'- gGCCUGGCCggCGCCGAggCCCUgGgCCa -3'
miRNA:   3'- -CGGACCGGuaGUGGCUgaGGGGgC-GG- -5'
11951 5' -61.4 NC_003278.1 + 21457 0.71 0.128379
Target:  5'- gGCCUGGCCcagggccucggCGCCGGCcaggCCggCCCGCUg -3'
miRNA:   3'- -CGGACCGGua---------GUGGCUGa---GG--GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 21022 0.67 0.284251
Target:  5'- gGCCUGGCCGcCAacCCGGuggUCCUggcaauugCCGCCg -3'
miRNA:   3'- -CGGACCGGUaGU--GGCUg--AGGG--------GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 20831 0.68 0.220502
Target:  5'- aGCCUuGCCAucacccUCGCCGGCaUUCUCgGCCc -3'
miRNA:   3'- -CGGAcCGGU------AGUGGCUG-AGGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 20171 0.67 0.263719
Target:  5'- aCCUGGuCCAUUuucucuGCCGgaaUCCCCauCGCCg -3'
miRNA:   3'- cGGACC-GGUAG------UGGCug-AGGGG--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.