miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 5' -61.4 NC_003278.1 + 19695 0.66 0.329057
Target:  5'- cGCCUGGCUGUUGauGGCgCCauuggCCGCCu -3'
miRNA:   3'- -CGGACCGGUAGUggCUGaGGg----GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 29787 0.69 0.188404
Target:  5'- cGCCuUGGUCAUCuuCGACgggUCCUgGCCu -3'
miRNA:   3'- -CGG-ACCGGUAGugGCUGa--GGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 34387 0.68 0.232196
Target:  5'- cGCCggGGCCAguaGCUGGacCUUCCUCGUCg -3'
miRNA:   3'- -CGGa-CCGGUag-UGGCU--GAGGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 14687 0.67 0.250711
Target:  5'- cGCCgaccaGGCCGUUGCCGGCcagCaCCuuGCg -3'
miRNA:   3'- -CGGa----CCGGUAGUGGCUGa--G-GGggCGg -5'
11951 5' -61.4 NC_003278.1 + 5049 0.67 0.270426
Target:  5'- uGCUcGGCgAUCGCuuCGACggCCUCGCCg -3'
miRNA:   3'- -CGGaCCGgUAGUG--GCUGagGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 20008 0.67 0.27727
Target:  5'- -aCUGGCCcUgGgCGACUUCCuuGUCg -3'
miRNA:   3'- cgGACCGGuAgUgGCUGAGGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 90 0.8 0.027457
Target:  5'- uCCUGGCCGcaucggcucauUCGCCGGCgcgcgcagucgucCCCCCGCCa -3'
miRNA:   3'- cGGACCGGU-----------AGUGGCUGa------------GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 5865 0.71 0.140136
Target:  5'- cGUCgGcGCCGUUGCCGACUaccaCCuuGCCg -3'
miRNA:   3'- -CGGaC-CGGUAGUGGCUGAg---GGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 3057 0.69 0.19862
Target:  5'- gGCCguucGGUgAUCGCCagguguggcugGGCUaugaCCCCGCCg -3'
miRNA:   3'- -CGGa---CCGgUAGUGG-----------CUGAg---GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 20171 0.67 0.263719
Target:  5'- aCCUGGuCCAUUuucucuGCCGgaaUCCCCauCGCCg -3'
miRNA:   3'- cGGACC-GGUAG------UGGCug-AGGGG--GCGG- -5'
11951 5' -61.4 NC_003278.1 + 19327 0.66 0.313563
Target:  5'- cGCCcgGGCCGUCGCgucGCUgCCuuGCa -3'
miRNA:   3'- -CGGa-CCGGUAGUGgc-UGAgGGggCGg -5'
11951 5' -61.4 NC_003278.1 + 21524 0.77 0.053953
Target:  5'- gGCCUGGCCggCGCCGAggCCCUgGgCCa -3'
miRNA:   3'- -CGGACCGGuaGUGGCUgaGGGGgC-GG- -5'
11951 5' -61.4 NC_003278.1 + 33028 0.66 0.312045
Target:  5'- cGCaCUGGCCGacaccgCGCCGGCggauuggucgaaCCCaacuaCGCCg -3'
miRNA:   3'- -CG-GACCGGUa-----GUGGCUGa-----------GGGg----GCGG- -5'
11951 5' -61.4 NC_003278.1 + 5019 0.68 0.220502
Target:  5'- aCCUGGCCGaacUCggcuuggguGCgGGCUUCCuuGCCc -3'
miRNA:   3'- cGGACCGGU---AG---------UGgCUGAGGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 9572 0.78 0.042874
Target:  5'- gGCCUGGCgggaaagcugggCGUCGCUGGCUUUCCuCGCCa -3'
miRNA:   3'- -CGGACCG------------GUAGUGGCUGAGGGG-GCGG- -5'
11951 5' -61.4 NC_003278.1 + 18359 0.66 0.298629
Target:  5'- gGCCUugaccgGGCCGUUcauGCCG---CCCCCGCg -3'
miRNA:   3'- -CGGA------CCGGUAG---UGGCugaGGGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 21584 0.7 0.178654
Target:  5'- aGCCUgacGGCCcgCGCUGACcaggCCUUgGCCg -3'
miRNA:   3'- -CGGA---CCGGuaGUGGCUGa---GGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 9854 0.7 0.173949
Target:  5'- gGCCUGGCCuggGCCGAgUgCgCCGCg -3'
miRNA:   3'- -CGGACCGGuagUGGCUgAgGgGGCGg -5'
11951 5' -61.4 NC_003278.1 + 9753 0.7 0.173949
Target:  5'- gGCCgcuuaCCAUCAgUGGCUgUCCCGCCg -3'
miRNA:   3'- -CGGacc--GGUAGUgGCUGAgGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 31745 0.7 0.169354
Target:  5'- cGCCUGGCCgguGUC-CCGGgcaCCCUGCUg -3'
miRNA:   3'- -CGGACCGG---UAGuGGCUgagGGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.