miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11960 5' -59.3 NC_003278.1 + 6541 1.11 0.000189
Target:  5'- uCGAUGCCGGCGAUUACGCCGGCGCCCu -3'
miRNA:   3'- -GCUACGGCCGCUAAUGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 9083 0.82 0.032131
Target:  5'- uGGUGCuCGGCGGUgcCGCCGGCauagccGCCCg -3'
miRNA:   3'- gCUACG-GCCGCUAauGCGGCCG------CGGG- -5'
11960 5' -59.3 NC_003278.1 + 6890 0.78 0.06456
Target:  5'- uCGAUGCCGGCuugcaccugcccGggUugGCCGGgGCUCu -3'
miRNA:   3'- -GCUACGGCCG------------CuaAugCGGCCgCGGG- -5'
11960 5' -59.3 NC_003278.1 + 22808 0.78 0.06456
Target:  5'- uGAaGCCGGUGcucGCGCCGGCGCUg -3'
miRNA:   3'- gCUaCGGCCGCuaaUGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 2577 0.76 0.088445
Target:  5'- uGcgGCCGGCGGUaUAgGUgaacUGGCGCCCa -3'
miRNA:   3'- gCuaCGGCCGCUA-AUgCG----GCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 23495 0.76 0.088445
Target:  5'- uGAUGCCGGUGuagucgcCGCCGGUGUCg -3'
miRNA:   3'- gCUACGGCCGCuaau---GCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 21665 0.76 0.090993
Target:  5'- uCGGUGCCcuGGUGcucgGCGCCaGCGCCCc -3'
miRNA:   3'- -GCUACGG--CCGCuaa-UGCGGcCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 6617 0.74 0.114024
Target:  5'- ---aGUCGGCGAUguccaggGCGCCGGCGUa- -3'
miRNA:   3'- gcuaCGGCCGCUAa------UGCGGCCGCGgg -5'
11960 5' -59.3 NC_003278.1 + 29963 0.74 0.12399
Target:  5'- uCGuUGCCGGCGGUcuucugGCCGGUcacGCCCa -3'
miRNA:   3'- -GCuACGGCCGCUAaug---CGGCCG---CGGG- -5'
11960 5' -59.3 NC_003278.1 + 16689 0.73 0.131077
Target:  5'- uCGA-GCUGGCGGUcGCGCCaaucGCGCUCg -3'
miRNA:   3'- -GCUaCGGCCGCUAaUGCGGc---CGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 12298 0.73 0.142411
Target:  5'- uGAUGCCcuuGGCGAUcACGUCGaCGCUCa -3'
miRNA:   3'- gCUACGG---CCGCUAaUGCGGCcGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 32684 0.73 0.150457
Target:  5'- ---gGCCgGGCGAcuugACGCCgaugauGGCGCCCg -3'
miRNA:   3'- gcuaCGG-CCGCUaa--UGCGG------CCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 12725 0.72 0.158051
Target:  5'- uCGAUGgCGaCGAaguucguugucaUGCGCUGGCGCCCa -3'
miRNA:   3'- -GCUACgGCcGCUa-----------AUGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 15068 0.72 0.163304
Target:  5'- aGGUcCCGGCGGUgACGCCGGaguugGCCa -3'
miRNA:   3'- gCUAcGGCCGCUAaUGCGGCCg----CGGg -5'
11960 5' -59.3 NC_003278.1 + 2800 0.72 0.1678
Target:  5'- -cAUGCCGGUGGUgucgACGCCgauguaGGUGaCCCa -3'
miRNA:   3'- gcUACGGCCGCUAa---UGCGG------CCGC-GGG- -5'
11960 5' -59.3 NC_003278.1 + 2388 0.72 0.1678
Target:  5'- cCGAUGCCGGUGcucgACgGCCGGgGCauCCu -3'
miRNA:   3'- -GCUACGGCCGCuaa-UG-CGGCCgCG--GG- -5'
11960 5' -59.3 NC_003278.1 + 21630 0.72 0.171477
Target:  5'- -cAUGCUgGGCGAccugggcaagaGCGCCGGCGCCa -3'
miRNA:   3'- gcUACGG-CCGCUaa---------UGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 21743 0.72 0.172408
Target:  5'- uGAUgGCCuGCGccgggGCGCUGGCGCCg -3'
miRNA:   3'- gCUA-CGGcCGCuaa--UGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 9023 0.72 0.176651
Target:  5'- -uAUGCCGGCGGcacCGCCGagcaccaGCGCCUg -3'
miRNA:   3'- gcUACGGCCGCUaauGCGGC-------CGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 13949 0.72 0.177128
Target:  5'- aGGUGCCGGgGA---CGCCGGCGg-- -3'
miRNA:   3'- gCUACGGCCgCUaauGCGGCCGCggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.