miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11960 5' -59.3 NC_003278.1 + 27 0.66 0.387813
Target:  5'- ---cGCCGGCGAaUGaGCCGauGCGgCCa -3'
miRNA:   3'- gcuaCGGCCGCUaAUgCGGC--CGCgGG- -5'
11960 5' -59.3 NC_003278.1 + 1957 0.68 0.297881
Target:  5'- -aGUGCCGGaguGGUucUGCGCCcuacagaGCGCCCu -3'
miRNA:   3'- gcUACGGCCg--CUA--AUGCGGc------CGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 2028 0.71 0.181962
Target:  5'- uCGGUGCCgcGGCGcAUguacUugGCCagcGGCGCCUg -3'
miRNA:   3'- -GCUACGG--CCGC-UA----AugCGG---CCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 2388 0.72 0.1678
Target:  5'- cCGAUGCCGGUGcucgACgGCCGGgGCauCCu -3'
miRNA:   3'- -GCUACGGCCGCuaa-UG-CGGCCgCG--GG- -5'
11960 5' -59.3 NC_003278.1 + 2577 0.76 0.088445
Target:  5'- uGcgGCCGGCGGUaUAgGUgaacUGGCGCCCa -3'
miRNA:   3'- gCuaCGGCCGCUA-AUgCG----GCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 2800 0.72 0.1678
Target:  5'- -cAUGCCGGUGGUgucgACGCCgauguaGGUGaCCCa -3'
miRNA:   3'- gcUACGGCCGCUAa---UGCGG------CCGC-GGG- -5'
11960 5' -59.3 NC_003278.1 + 3299 0.66 0.424657
Target:  5'- uGAUGCgauCGGCG-----GCCGGCuuGCCCu -3'
miRNA:   3'- gCUACG---GCCGCuaaugCGGCCG--CGGG- -5'
11960 5' -59.3 NC_003278.1 + 4538 0.66 0.387813
Target:  5'- ---gGCCGGCuGGUga-GuUCGGCGCCUa -3'
miRNA:   3'- gcuaCGGCCG-CUAaugC-GGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 5507 0.66 0.387813
Target:  5'- uCGGUacgGCUGGCGAUggugccgcugACGCCGaUGCCg -3'
miRNA:   3'- -GCUA---CGGCCGCUAa---------UGCGGCcGCGGg -5'
11960 5' -59.3 NC_003278.1 + 5740 0.7 0.207919
Target:  5'- gCGcgGuuGGUGGUagccgcgGCGCUGGUGCCg -3'
miRNA:   3'- -GCuaCggCCGCUAa------UGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 5871 0.67 0.370195
Target:  5'- ---aGUCGGCGucgGCGCCGuuGCCg -3'
miRNA:   3'- gcuaCGGCCGCuaaUGCGGCcgCGGg -5'
11960 5' -59.3 NC_003278.1 + 6541 1.11 0.000189
Target:  5'- uCGAUGCCGGCGAUUACGCCGGCGCCCu -3'
miRNA:   3'- -GCUACGGCCGCUAAUGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 6579 0.66 0.424657
Target:  5'- uCGAUGCgccagagcaugaCGGUGGUgaccaccuCGUCcugGGCGCCCu -3'
miRNA:   3'- -GCUACG------------GCCGCUAau------GCGG---CCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 6617 0.74 0.114024
Target:  5'- ---aGUCGGCGAUguccaggGCGCCGGCGUa- -3'
miRNA:   3'- gcuaCGGCCGCUAa------UGCGGCCGCGgg -5'
11960 5' -59.3 NC_003278.1 + 6890 0.78 0.06456
Target:  5'- uCGAUGCCGGCuugcaccugcccGggUugGCCGGgGCUCu -3'
miRNA:   3'- -GCUACGGCCG------------CuaAugCGGCCgCGGG- -5'
11960 5' -59.3 NC_003278.1 + 7023 0.69 0.269438
Target:  5'- cCGA-GCCGGCGgg-GCGCgGGguaCGCUCg -3'
miRNA:   3'- -GCUaCGGCCGCuaaUGCGgCC---GCGGG- -5'
11960 5' -59.3 NC_003278.1 + 7261 0.7 0.237012
Target:  5'- uCGcgGCCGGC---UAUGCCGaacuCGCCCa -3'
miRNA:   3'- -GCuaCGGCCGcuaAUGCGGCc---GCGGG- -5'
11960 5' -59.3 NC_003278.1 + 7763 0.67 0.3676
Target:  5'- -uGUGCUGGCGGcacuacggucgcacCGCCGGCGUgaCCg -3'
miRNA:   3'- gcUACGGCCGCUaau-----------GCGGCCGCG--GG- -5'
11960 5' -59.3 NC_003278.1 + 7836 0.67 0.336634
Target:  5'- uCGGUcacGCCGGCGG-UGCGaCCGuaGUGCCg -3'
miRNA:   3'- -GCUA---CGGCCGCUaAUGC-GGC--CGCGGg -5'
11960 5' -59.3 NC_003278.1 + 8113 0.71 0.191983
Target:  5'- -cGUGCCGGUGGcca-GCCaGGCGCCg -3'
miRNA:   3'- gcUACGGCCGCUaaugCGG-CCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.