miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11960 5' -59.3 NC_003278.1 + 15916 0.67 0.370195
Target:  5'- aCGccGCCGGCGGUcuguaCUGGCGCUg -3'
miRNA:   3'- -GCuaCGGCCGCUAaugc-GGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 20264 0.69 0.243225
Target:  5'- aCGGcccUGCuCGGCa---ACGCUGGCGUCCa -3'
miRNA:   3'- -GCU---ACG-GCCGcuaaUGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 21053 0.69 0.249573
Target:  5'- --uUGCCgccgucguGGCGGUgcugGCCGGCGCCg -3'
miRNA:   3'- gcuACGG--------CCGCUAaug-CGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 21218 0.69 0.249573
Target:  5'- uGAUGUaccGCGccuuCGCCGGCGUCCu -3'
miRNA:   3'- gCUACGgc-CGCuaauGCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 16557 0.69 0.256057
Target:  5'- ---cGCUGGCGAggauggACaGCCGGuCGCCa -3'
miRNA:   3'- gcuaCGGCCGCUaa----UG-CGGCC-GCGGg -5'
11960 5' -59.3 NC_003278.1 + 20182 0.68 0.29274
Target:  5'- cCGcAUGCuCGGCGAcucgcugaaguacucCGCCGGCGUCg -3'
miRNA:   3'- -GC-UACG-GCCGCUaau------------GCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 10365 0.68 0.312954
Target:  5'- gCGAgcUGCUGGcCGAguggACGCCGccgaaGCCCa -3'
miRNA:   3'- -GCU--ACGGCC-GCUaa--UGCGGCcg---CGGG- -5'
11960 5' -59.3 NC_003278.1 + 26566 0.67 0.353133
Target:  5'- gCGgcGCCaGGUGGUcaGCGCgaucauCGGCGCCUa -3'
miRNA:   3'- -GCuaCGG-CCGCUAa-UGCG------GCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 7763 0.67 0.3676
Target:  5'- -uGUGCUGGCGGcacuacggucgcacCGCCGGCGUgaCCg -3'
miRNA:   3'- gcUACGGCCGCUaau-----------GCGGCCGCG--GG- -5'
11960 5' -59.3 NC_003278.1 + 14223 0.69 0.243225
Target:  5'- uGAcGCCGGCGGc-GCGCCcGGCGagacggcugacCCCa -3'
miRNA:   3'- gCUaCGGCCGCUaaUGCGG-CCGC-----------GGG- -5'
11960 5' -59.3 NC_003278.1 + 7261 0.7 0.237012
Target:  5'- uCGcgGCCGGC---UAUGCCGaacuCGCCCa -3'
miRNA:   3'- -GCuaCGGCCGcuaAUGCGGCc---GCGGG- -5'
11960 5' -59.3 NC_003278.1 + 29641 0.7 0.224985
Target:  5'- uCGAggccaCCGGCGAg---GCCGGUGCCg -3'
miRNA:   3'- -GCUac---GGCCGCUaaugCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 22808 0.78 0.06456
Target:  5'- uGAaGCCGGUGcucGCGCCGGCGCUg -3'
miRNA:   3'- gCUaCGGCCGCuaaUGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 2577 0.76 0.088445
Target:  5'- uGcgGCCGGCGGUaUAgGUgaacUGGCGCCCa -3'
miRNA:   3'- gCuaCGGCCGCUA-AUgCG----GCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 21665 0.76 0.090993
Target:  5'- uCGGUGCCcuGGUGcucgGCGCCaGCGCCCc -3'
miRNA:   3'- -GCUACGG--CCGCuaa-UGCGGcCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 2800 0.72 0.1678
Target:  5'- -cAUGCCGGUGGUgucgACGCCgauguaGGUGaCCCa -3'
miRNA:   3'- gcUACGGCCGCUAa---UGCGG------CCGC-GGG- -5'
11960 5' -59.3 NC_003278.1 + 21630 0.72 0.171477
Target:  5'- -cAUGCUgGGCGAccugggcaagaGCGCCGGCGCCa -3'
miRNA:   3'- gcUACGG-CCGCUaa---------UGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 9023 0.72 0.176651
Target:  5'- -uAUGCCGGCGGcacCGCCGagcaccaGCGCCUg -3'
miRNA:   3'- gcUACGGCCGCUaauGCGGC-------CGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 2028 0.71 0.181962
Target:  5'- uCGGUGCCgcGGCGcAUguacUugGCCagcGGCGCCUg -3'
miRNA:   3'- -GCUACGG--CCGC-UA----AugCGG---CCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 32287 0.7 0.207919
Target:  5'- cCGcUGcCCGGCGAUaucgACGCCGcCgGCCCg -3'
miRNA:   3'- -GCuAC-GGCCGCUAa---UGCGGCcG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.