Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11971 | 3' | -55.8 | NC_003278.1 | + | 2035 | 0.67 | 0.451931 |
Target: 5'- --cGCGGCGCauguacuuGGCCAGCGGcgccuGCaGCGg -3' miRNA: 3'- agaUGCCGCG--------UCGGUUGUCuu---CG-CGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 3631 | 0.67 | 0.451931 |
Target: 5'- gCUugGGCcuuGCuGGCCGACAGGAauaucugguuGCGCc -3' miRNA: 3'- aGAugCCG---CG-UCGGUUGUCUU----------CGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 8671 | 0.67 | 0.451931 |
Target: 5'- aCUuCGGCGCcGCC-ACcGAGGaCGCGg -3' miRNA: 3'- aGAuGCCGCGuCGGuUGuCUUC-GCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 17800 | 0.67 | 0.459106 |
Target: 5'- aCUACacccgcaccgcccaGGUGCuGGCCGACAcuaucgccGAAGCGCa -3' miRNA: 3'- aGAUG--------------CCGCG-UCGGUUGU--------CUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 31620 | 0.67 | 0.461168 |
Target: 5'- gCUGCGGCcugggcgGCGGCgCcGCAGGcuucaaccgGGCGCGu -3' miRNA: 3'- aGAUGCCG-------CGUCG-GuUGUCU---------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 32941 | 0.67 | 0.4622 |
Target: 5'- aCUACGGCGUAGuuggguucgaCCAAUccgccGGCGCGg -3' miRNA: 3'- aGAUGCCGCGUC----------GGUUGucu--UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 1640 | 0.67 | 0.471546 |
Target: 5'- cCUGCGGgucuaucCGCAGCUGAUGGggGUGg- -3' miRNA: 3'- aGAUGCC-------GCGUCGGUUGUCuuCGCgc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19445 | 0.67 | 0.483097 |
Target: 5'- cCUGuuGCGCGGCCAGCGc-GGUGCu -3' miRNA: 3'- aGAUgcCGCGUCGGUUGUcuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 33908 | 0.67 | 0.483097 |
Target: 5'- --gGCuGGUGUAGCCG-CGGAAGcCGCu -3' miRNA: 3'- agaUG-CCGCGUCGGUuGUCUUC-GCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19660 | 0.67 | 0.483097 |
Target: 5'- --cGCaGCGCuuacgcaaccucAGCCAgcaGCAGGAGCGCc -3' miRNA: 3'- agaUGcCGCG------------UCGGU---UGUCUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 1481 | 0.67 | 0.493715 |
Target: 5'- gCUGCaGGCGC-GUCuGCAuuGGCGCGa -3' miRNA: 3'- aGAUG-CCGCGuCGGuUGUcuUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 10000 | 0.67 | 0.493715 |
Target: 5'- ---cCGGCacgGCGGCgAGCAGAuGCGCu -3' miRNA: 3'- agauGCCG---CGUCGgUUGUCUuCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 14783 | 0.67 | 0.501211 |
Target: 5'- gCUACGGCaucacggacgcacuGCAuGCCAGC-GAGGCGg- -3' miRNA: 3'- aGAUGCCG--------------CGU-CGGUUGuCUUCGCgc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 16737 | 0.67 | 0.504438 |
Target: 5'- gCUGCaGGCGUAccgccGCCAACu---GCGCGa -3' miRNA: 3'- aGAUG-CCGCGU-----CGGUUGucuuCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 23237 | 0.67 | 0.504438 |
Target: 5'- aCU-CGGCGCGGgCGGCGcgcaGGGCGCu -3' miRNA: 3'- aGAuGCCGCGUCgGUUGUc---UUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 29213 | 0.66 | 0.514175 |
Target: 5'- --cGCGGCG--GCCAGCgaguucaAGAAGCGCc -3' miRNA: 3'- agaUGCCGCguCGGUUG-------UCUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19796 | 0.66 | 0.515261 |
Target: 5'- ---cCGGUGcCGGCCAgcGCGGcAGCGCu -3' miRNA: 3'- agauGCCGC-GUCGGU--UGUCuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 6471 | 0.66 | 0.526177 |
Target: 5'- aUUUcCGGCGUgcugcaGGCCGGCAaGGGCGCc -3' miRNA: 3'- -AGAuGCCGCG------UCGGUUGUcUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 6028 | 0.66 | 0.537178 |
Target: 5'- --gGCGGCcuGCcGCCggUGGAAGUGCc -3' miRNA: 3'- agaUGCCG--CGuCGGuuGUCUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 17631 | 0.66 | 0.537178 |
Target: 5'- gUCaACGGCGUGaCCGGCAucAGCGCc -3' miRNA: 3'- -AGaUGCCGCGUcGGUUGUcuUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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