miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 5' -61 NC_003278.1 + 32469 0.69 0.179799
Target:  5'- cGCGCAGguagccguCCUCGACGGCGaggucguucaggcuGCGCCa-- -3'
miRNA:   3'- uCGCGUU--------GGGGCUGCCGU--------------CGCGGaua -5'
11971 5' -61 NC_003278.1 + 31619 0.79 0.030299
Target:  5'- uGCuGCGGCCUgGGCGGCGGCGCCg-- -3'
miRNA:   3'- uCG-CGUUGGGgCUGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 31346 0.74 0.075448
Target:  5'- aAGCGaauCAGCCUCaaGGCGGCGGCGCCa-- -3'
miRNA:   3'- -UCGC---GUUGGGG--CUGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 31257 0.66 0.284062
Target:  5'- uGCGCGagcACCCCG-C-GCGGCGCUg-- -3'
miRNA:   3'- uCGCGU---UGGGGCuGcCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 30911 0.7 0.158008
Target:  5'- uGCGCGGCCUCGACc-CAGCGCUg-- -3'
miRNA:   3'- uCGCGUUGGGGCUGccGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 30232 0.7 0.144969
Target:  5'- cGCGCAgaugaugGCCCugguCGACGcGCuGCGCCUGg -3'
miRNA:   3'- uCGCGU-------UGGG----GCUGC-CGuCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 29816 0.71 0.112825
Target:  5'- cAGCGacaaCAGCCgCGcCGGCGGCGCCg-- -3'
miRNA:   3'- -UCGC----GUUGGgGCuGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 29246 0.67 0.249744
Target:  5'- cGGCGUGGCCgCCGGugcgaucuucacCGGCAGCGgCg-- -3'
miRNA:   3'- -UCGCGUUGG-GGCU------------GCCGUCGCgGaua -5'
11971 5' -61 NC_003278.1 + 28596 0.69 0.166973
Target:  5'- cGCGaCAGCCCgUGGCGGCaAGCuGCCg-- -3'
miRNA:   3'- uCGC-GUUGGG-GCUGCCG-UCG-CGGaua -5'
11971 5' -61 NC_003278.1 + 27898 0.69 0.162435
Target:  5'- cGCGCAGCCCCuGCGGCguauAGCGgUa-- -3'
miRNA:   3'- uCGCGUUGGGGcUGCCG----UCGCgGaua -5'
11971 5' -61 NC_003278.1 + 26928 0.66 0.276912
Target:  5'- cGCGCAgcGCCUCGGCGaugauGCGgucgaccucaccGCGCCUGa -3'
miRNA:   3'- uCGCGU--UGGGGCUGC-----CGU------------CGCGGAUa -5'
11971 5' -61 NC_003278.1 + 26593 0.7 0.145374
Target:  5'- cGGCGCcuACCCUGGCGGacgcgaauGCGCCg-- -3'
miRNA:   3'- -UCGCGu-UGGGGCUGCCgu------CGCGGaua -5'
11971 5' -61 NC_003278.1 + 23348 0.68 0.196655
Target:  5'- cAGCcuCAGCgCCGACGGCGGUuacaucaccaGCCUGg -3'
miRNA:   3'- -UCGc-GUUGgGGCUGCCGUCG----------CGGAUa -5'
11971 5' -61 NC_003278.1 + 22405 0.67 0.249744
Target:  5'- cAGCGCGACgCCGGCuaucCGGUGCCg-- -3'
miRNA:   3'- -UCGCGUUGgGGCUGcc--GUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 22126 0.67 0.249744
Target:  5'- cGGC-CAGCUCCGGCaGCAGCacGCCg-- -3'
miRNA:   3'- -UCGcGUUGGGGCUGcCGUCG--CGGaua -5'
11971 5' -61 NC_003278.1 + 21847 0.68 0.196655
Target:  5'- gAGCGCGAacgcaaCaaGGCGGC-GCGCCUGc -3'
miRNA:   3'- -UCGCGUUg-----GggCUGCCGuCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 21681 0.67 0.230841
Target:  5'- cGGCGCcagcGCCCCGGCG-CAG-GCCa-- -3'
miRNA:   3'- -UCGCGu---UGGGGCUGCcGUCgCGGaua -5'
11971 5' -61 NC_003278.1 + 21346 0.68 0.20753
Target:  5'- aAGCGCGccguCCagcgCGuCGGCGGCGCCg-- -3'
miRNA:   3'- -UCGCGUu---GGg---GCuGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 21120 0.66 0.291358
Target:  5'- cGGCGcCGGCCagcaccgccaCGACGGCGGCaauuGCCa-- -3'
miRNA:   3'- -UCGC-GUUGGg---------GCUGCCGUCG----CGGaua -5'
11971 5' -61 NC_003278.1 + 19960 0.7 0.158008
Target:  5'- gGGUGCGGgCCUGuuGCcGCAGCGCCUGc -3'
miRNA:   3'- -UCGCGUUgGGGC--UGcCGUCGCGGAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.