Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1198 | 3' | -58.9 | NC_001132.2 | + | 127642 | 0.67 | 0.832104 |
|
Target: 5'- aCgCCGACGAggaUCGUCGGgGUUCu- -3' miRNA: 3'- -GgGGCUGCUaggAGCAGCCgCAGGcu -5' |
|||||||
| 1198 | 3' | -58.9 | NC_001132.2 | + | 127687 | 0.67 | 0.832104 |
|
Target: 5'- aCgCCGACGAggaUCGUCGGgGUUCu- -3' miRNA: 3'- -GgGGCUGCUaggAGCAGCCgCAGGcu -5' |
|||||||
| 1198 | 3' | -58.9 | NC_001132.2 | + | 159929 | 0.68 | 0.7712 |
|
Target: 5'- aCCCCGuCGcucGUCCUCGguauaguacgcaCGGCGUCUc- -3' miRNA: 3'- -GGGGCuGC---UAGGAGCa-----------GCCGCAGGcu -5' |
|||||||
| 1198 | 3' | -58.9 | NC_001132.2 | + | 159728 | 0.68 | 0.764022 |
|
Target: 5'- aCUCCGACGuuuuaaccaCUUCGUUGG-GUCCGGc -3' miRNA: 3'- -GGGGCUGCua-------GGAGCAGCCgCAGGCU- -5' |
|||||||
| 1198 | 3' | -58.9 | NC_001132.2 | + | 157460 | 0.68 | 0.754956 |
|
Target: 5'- gCCCCGACGcguacacggCUUC-UCGGaCGUCCGu -3' miRNA: 3'- -GGGGCUGCua-------GGAGcAGCC-GCAGGCu -5' |
|||||||
| 1198 | 3' | -58.9 | NC_001132.2 | + | 10790 | 0.68 | 0.754956 |
|
Target: 5'- uCCCgGGCGGaCUUCGgucaGGCGUCCc- -3' miRNA: 3'- -GGGgCUGCUaGGAGCag--CCGCAGGcu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home