miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11980 5' -63.6 NC_003278.1 + 13118 1.12 0.000072
Target:  5'- gCCCGCGCCGCCGACGGUCGCGUCGGCg -3'
miRNA:   3'- -GGGCGCGGCGGCUGCCAGCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 31860 0.79 0.028453
Target:  5'- gCCGCGCCGCCGGCGGgCGCcgacCGGa -3'
miRNA:   3'- gGGCGCGGCGGCUGCCaGCGca--GCCg -5'
11980 5' -63.6 NC_003278.1 + 29879 0.78 0.032745
Target:  5'- gCgGCGCCGCCGGCGcggcuguuGUCGCugcgGUCGGCc -3'
miRNA:   3'- gGgCGCGGCGGCUGC--------CAGCG----CAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 13829 0.75 0.058827
Target:  5'- cCCUGCGCCG-CG-UGGUCGagccCGUCGGCu -3'
miRNA:   3'- -GGGCGCGGCgGCuGCCAGC----GCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 31917 0.75 0.065703
Target:  5'- gUCgGCGcCCGCCGGCGG-CGCGgCGGa -3'
miRNA:   3'- -GGgCGC-GGCGGCUGCCaGCGCaGCCg -5'
11980 5' -63.6 NC_003278.1 + 23111 0.73 0.086444
Target:  5'- aCgCGCGCaCGCCGuCGuagcuGUCGCGgUCGGCc -3'
miRNA:   3'- -GgGCGCG-GCGGCuGC-----CAGCGC-AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 1597 0.73 0.091284
Target:  5'- aCCCGCagGCCGgCGAgcUGGUCGuCG-CGGCu -3'
miRNA:   3'- -GGGCG--CGGCgGCU--GCCAGC-GCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 15913 0.72 0.09638
Target:  5'- gCUaCGCCGCCGGCGGUC-UGUacUGGCg -3'
miRNA:   3'- gGGcGCGGCGGCUGCCAGcGCA--GCCG- -5'
11980 5' -63.6 NC_003278.1 + 17130 0.72 0.107388
Target:  5'- aCCgGCGUaucgaGUggaaaGGCGGUgGCGUCGGCg -3'
miRNA:   3'- -GGgCGCGg----CGg----CUGCCAgCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 33032 0.72 0.110319
Target:  5'- gCCGCGCacugGCCGACac-CGCGcCGGCg -3'
miRNA:   3'- gGGCGCGg---CGGCUGccaGCGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 14218 0.71 0.116408
Target:  5'- aUCgGUGaCGCCGGCGG-CGCGccCGGCg -3'
miRNA:   3'- -GGgCGCgGCGGCUGCCaGCGCa-GCCG- -5'
11980 5' -63.6 NC_003278.1 + 17299 0.71 0.120855
Target:  5'- gCUGaCGCCGCCGAugaccgcgcuauUGGUCGCGgcuucauccucgccCGGCu -3'
miRNA:   3'- gGGC-GCGGCGGCU------------GCCAGCGCa-------------GCCG- -5'
11980 5' -63.6 NC_003278.1 + 21412 0.71 0.122809
Target:  5'- gCgGCGCCGCCGACG--CGCuggaCGGCg -3'
miRNA:   3'- gGgCGCGGCGGCUGCcaGCGca--GCCG- -5'
11980 5' -63.6 NC_003278.1 + 32024 0.7 0.135519
Target:  5'- aCCCgGUGCCGCUGAUcGUCuucgagaacgucccGCGUCuGGCg -3'
miRNA:   3'- -GGG-CGCGGCGGCUGcCAG--------------CGCAG-CCG- -5'
11980 5' -63.6 NC_003278.1 + 32315 0.7 0.144018
Target:  5'- gCCGaggauGUCGCCGACGG-CGCG-CaGGCu -3'
miRNA:   3'- gGGCg----CGGCGGCUGCCaGCGCaG-CCG- -5'
11980 5' -63.6 NC_003278.1 + 28516 0.7 0.144018
Target:  5'- aUCGCGCUGCUGcaccACGGcaucgacgcCGUGUCGGCc -3'
miRNA:   3'- gGGCGCGGCGGC----UGCCa--------GCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 13175 0.7 0.144018
Target:  5'- -aCGCGaCCGUCGGCGG-CGCG--GGCg -3'
miRNA:   3'- ggGCGC-GGCGGCUGCCaGCGCagCCG- -5'
11980 5' -63.6 NC_003278.1 + 12099 0.7 0.150611
Target:  5'- aCCUGCGCgcaguucuuccCGCCGGCGGuaccaccgaacucaUCaGCGaCGGCg -3'
miRNA:   3'- -GGGCGCG-----------GCGGCUGCC--------------AG-CGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 9650 0.69 0.159967
Target:  5'- gCUGCuGCCGCUGuuGGUCaG-GUCGGCc -3'
miRNA:   3'- gGGCG-CGGCGGCugCCAG-CgCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 22288 0.69 0.164196
Target:  5'- aCUCGauCCGCCG-CGGggUGcCGUCGGCg -3'
miRNA:   3'- -GGGCgcGGCGGCuGCCa-GC-GCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.