Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11980 | 5' | -63.6 | NC_003278.1 | + | 1597 | 0.73 | 0.091284 |
Target: 5'- aCCCGCagGCCGgCGAgcUGGUCGuCG-CGGCu -3' miRNA: 3'- -GGGCG--CGGCgGCU--GCCAGC-GCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 2983 | 0.68 | 0.186879 |
Target: 5'- gUgGCGCCuCCGGCGGUacCGgG-CGGCa -3' miRNA: 3'- gGgCGCGGcGGCUGCCA--GCgCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 3600 | 0.66 | 0.291657 |
Target: 5'- aCCCGaucaucCUGCCGaACGG-CGCGgaauugcacuuccUCGGCa -3' miRNA: 3'- -GGGCgc----GGCGGC-UGCCaGCGC-------------AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 7761 | 0.66 | 0.278645 |
Target: 5'- gCUGUGCUGgCGgcacuACGGUCGCaccGcCGGCg -3' miRNA: 3'- gGGCGCGGCgGC-----UGCCAGCG---CaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 8104 | 0.66 | 0.292355 |
Target: 5'- gCCUGCuGUCGCUGAuccugcCGaccUGCGUCGGCu -3' miRNA: 3'- -GGGCG-CGGCGGCU------GCca-GCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 8811 | 0.66 | 0.259048 |
Target: 5'- --aGCGCCGCCGAgGGcggccagggucuUCGgGccagcgaugccaUCGGCg -3' miRNA: 3'- gggCGCGGCGGCUgCC------------AGCgC------------AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 9650 | 0.69 | 0.159967 |
Target: 5'- gCUGCuGCCGCUGuuGGUCaG-GUCGGCc -3' miRNA: 3'- gGGCG-CGGCGGCugCCAG-CgCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 12099 | 0.7 | 0.150611 |
Target: 5'- aCCUGCGCgcaguucuuccCGCCGGCGGuaccaccgaacucaUCaGCGaCGGCg -3' miRNA: 3'- -GGGCGCG-----------GCGGCUGCC--------------AG-CGCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 12107 | 0.69 | 0.177492 |
Target: 5'- aCCGCGCCGUCG-CGGUagguggUGCGaugcagGGCg -3' miRNA: 3'- gGGCGCGGCGGCuGCCA------GCGCag----CCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 12336 | 0.66 | 0.292355 |
Target: 5'- gCCCGguaugaCGCCGCCGugGGUaugacCGaccaGGCu -3' miRNA: 3'- -GGGC------GCGGCGGCugCCA-----GCgcagCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 13118 | 1.12 | 0.000072 |
Target: 5'- gCCCGCGCCGCCGACGGUCGCGUCGGCg -3' miRNA: 3'- -GGGCGCGGCGGCUGCCAGCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 13175 | 0.7 | 0.144018 |
Target: 5'- -aCGCGaCCGUCGGCGG-CGCG--GGCg -3' miRNA: 3'- ggGCGC-GGCGGCUGCCaGCGCagCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 13829 | 0.75 | 0.058827 |
Target: 5'- cCCUGCGCCG-CG-UGGUCGagccCGUCGGCu -3' miRNA: 3'- -GGGCGCGGCgGCuGCCAGC----GCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 14218 | 0.71 | 0.116408 |
Target: 5'- aUCgGUGaCGCCGGCGG-CGCGccCGGCg -3' miRNA: 3'- -GGgCGCgGCGGCUGCCaGCGCa-GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 14274 | 0.67 | 0.227194 |
Target: 5'- -gCGCGCCGCCGGC-GUCaccgaugagcauauGgGUgGGCu -3' miRNA: 3'- ggGCGCGGCGGCUGcCAG--------------CgCAgCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 15913 | 0.72 | 0.09638 |
Target: 5'- gCUaCGCCGCCGGCGGUC-UGUacUGGCg -3' miRNA: 3'- gGGcGCGGCGGCUGCCAGcGCA--GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 16699 | 0.66 | 0.265452 |
Target: 5'- gUCgGUGUCGUCGagcugGCGGUCGCGccaaUCGcGCu -3' miRNA: 3'- -GGgCGCGGCGGC-----UGCCAGCGC----AGC-CG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 17130 | 0.72 | 0.107388 |
Target: 5'- aCCgGCGUaucgaGUggaaaGGCGGUgGCGUCGGCg -3' miRNA: 3'- -GGgCGCGg----CGg----CUGCCAgCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 17299 | 0.71 | 0.120855 |
Target: 5'- gCUGaCGCCGCCGAugaccgcgcuauUGGUCGCGgcuucauccucgccCGGCu -3' miRNA: 3'- gGGC-GCGGCGGCU------------GCCAGCGCa-------------GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 17474 | 0.67 | 0.240591 |
Target: 5'- uCuuGCaGCCGCUGGCGGagacauaaGCGaaGGCg -3' miRNA: 3'- -GggCG-CGGCGGCUGCCag------CGCagCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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