Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11980 | 5' | -63.6 | NC_003278.1 | + | 13118 | 1.12 | 0.000072 |
Target: 5'- gCCCGCGCCGCCGACGGUCGCGUCGGCg -3' miRNA: 3'- -GGGCGCGGCGGCUGCCAGCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 29868 | 0.66 | 0.259048 |
Target: 5'- uUCaaGCCGCUGuucaACGGUCGCGcguUgGGCg -3' miRNA: 3'- gGGcgCGGCGGC----UGCCAGCGC---AgCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 29370 | 0.66 | 0.271985 |
Target: 5'- gCCUGCuaCGUucugggcgacgUGGCGGUgCGCGgCGGCg -3' miRNA: 3'- -GGGCGcgGCG-----------GCUGCCA-GCGCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 7761 | 0.66 | 0.278645 |
Target: 5'- gCUGUGCUGgCGgcacuACGGUCGCaccGcCGGCg -3' miRNA: 3'- gGGCGCGGCgGC-----UGCCAGCG---CaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 31635 | 0.66 | 0.284067 |
Target: 5'- gCgGCGCCGCaggcuucaaccgGGCGcGUcCGCGggUCGGCa -3' miRNA: 3'- gGgCGCGGCGg-----------CUGC-CA-GCGC--AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 20798 | 0.66 | 0.285435 |
Target: 5'- gCCGCGUuuucggCGCUGAUGGcuacCGUUGGCa -3' miRNA: 3'- gGGCGCG------GCGGCUGCCagc-GCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 26564 | 0.66 | 0.285435 |
Target: 5'- -aCGCGgCGCCaGGUGGUCaGCGcgaucaUCGGCg -3' miRNA: 3'- ggGCGCgGCGG-CUGCCAG-CGC------AGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 8104 | 0.66 | 0.292355 |
Target: 5'- gCCUGCuGUCGCUGAuccugcCGaccUGCGUCGGCu -3' miRNA: 3'- -GGGCG-CGGCGGCU------GCca-GCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 22384 | 0.66 | 0.292355 |
Target: 5'- aCCaGCGCCGUCGACcaguugcagCGCGacgcCGGCu -3' miRNA: 3'- gGG-CGCGGCGGCUGcca------GCGCa---GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 32552 | 0.68 | 0.188809 |
Target: 5'- aCCCGCGCgCGCCGGCaaaCGCccugcaauaccagcaGUaCGGCg -3' miRNA: 3'- -GGGCGCG-GCGGCUGccaGCG---------------CA-GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 21348 | 0.69 | 0.168526 |
Target: 5'- -gCGCGCCGUCcag---CGCGUCGGCg -3' miRNA: 3'- ggGCGCGGCGGcugccaGCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 31860 | 0.79 | 0.028453 |
Target: 5'- gCCGCGCCGCCGGCGGgCGCcgacCGGa -3' miRNA: 3'- gGGCGCGGCGGCUGCCaGCGca--GCCg -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 13829 | 0.75 | 0.058827 |
Target: 5'- cCCUGCGCCG-CG-UGGUCGagccCGUCGGCu -3' miRNA: 3'- -GGGCGCGGCgGCuGCCAGC----GCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 1597 | 0.73 | 0.091284 |
Target: 5'- aCCCGCagGCCGgCGAgcUGGUCGuCG-CGGCu -3' miRNA: 3'- -GGGCG--CGGCgGCU--GCCAGC-GCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 15913 | 0.72 | 0.09638 |
Target: 5'- gCUaCGCCGCCGGCGGUC-UGUacUGGCg -3' miRNA: 3'- gGGcGCGGCGGCUGCCAGcGCA--GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 14218 | 0.71 | 0.116408 |
Target: 5'- aUCgGUGaCGCCGGCGG-CGCGccCGGCg -3' miRNA: 3'- -GGgCGCgGCGGCUGCCaGCGCa-GCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 32024 | 0.7 | 0.135519 |
Target: 5'- aCCCgGUGCCGCUGAUcGUCuucgagaacgucccGCGUCuGGCg -3' miRNA: 3'- -GGG-CGCGGCGGCUGcCAG--------------CGCAG-CCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 28516 | 0.7 | 0.144018 |
Target: 5'- aUCGCGCUGCUGcaccACGGcaucgacgcCGUGUCGGCc -3' miRNA: 3'- gGGCGCGGCGGC----UGCCa--------GCGCAGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 12099 | 0.7 | 0.150611 |
Target: 5'- aCCUGCGCgcaguucuuccCGCCGGCGGuaccaccgaacucaUCaGCGaCGGCg -3' miRNA: 3'- -GGGCGCG-----------GCGGCUGCC--------------AG-CGCaGCCG- -5' |
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11980 | 5' | -63.6 | NC_003278.1 | + | 29879 | 0.78 | 0.032745 |
Target: 5'- gCgGCGCCGCCGGCGcggcuguuGUCGCugcgGUCGGCc -3' miRNA: 3'- gGgCGCGGCGGCUGC--------CAGCG----CAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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