miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11989 3' -58.3 NC_003278.1 + 2786 0.66 0.49384
Target:  5'- gCGACgccagagcccaUGCCGGUggUGuCGACGCCGAUGu -3'
miRNA:   3'- -GCUG-----------GCGGUCGa-GCuGCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 4532 0.66 0.49384
Target:  5'- gGGCCugGCCGGCUgGugaguuCGGCGCCuauGGCGa -3'
miRNA:   3'- gCUGG--CGGUCGAgCu-----GCUGUGG---CUGC- -5'
11989 3' -58.3 NC_003278.1 + 17232 0.66 0.49384
Target:  5'- gCGACCaauaGCgCGGUcaUCGGCGGCgucagcGCCGAUGg -3'
miRNA:   3'- -GCUGG----CG-GUCG--AGCUGCUG------UGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 11877 0.66 0.49384
Target:  5'- uGGCUGCCuugGGCaUCGccgcgggcCGGCGCCGACc -3'
miRNA:   3'- gCUGGCGG---UCG-AGCu-------GCUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 6701 0.66 0.492814
Target:  5'- gCGGCC-UCGGCgaucucuUCGGCGAUgacgcaGCCGGCGg -3'
miRNA:   3'- -GCUGGcGGUCG-------AGCUGCUG------UGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 13091 0.66 0.483627
Target:  5'- gGACCGCguaaCAGCUacaucuuccaCGcccGCGcCGCCGACGg -3'
miRNA:   3'- gCUGGCG----GUCGA----------GC---UGCuGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 6623 0.66 0.483627
Target:  5'- gCGuACCGCCGGCU--GCGucauCGCCGAa- -3'
miRNA:   3'- -GC-UGGCGGUCGAgcUGCu---GUGGCUgc -5'
11989 3' -58.3 NC_003278.1 + 15143 0.66 0.483627
Target:  5'- -uGCUGCCAGa--GGCGGUACCGGCa -3'
miRNA:   3'- gcUGGCGGUCgagCUGCUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 6521 0.66 0.483627
Target:  5'- -cACCGUCAuGCUCuggcgcauCGAUGCCGGCGa -3'
miRNA:   3'- gcUGGCGGU-CGAGcu------GCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 32718 0.66 0.477548
Target:  5'- uGGCCGCgGGgaUCGGCGACggaguacgugccuugGCCgGGCGa -3'
miRNA:   3'- gCUGGCGgUCg-AGCUGCUG---------------UGG-CUGC- -5'
11989 3' -58.3 NC_003278.1 + 21537 0.66 0.473517
Target:  5'- gGGCCGUCAgGCugUCGcCGGCcUCGACGg -3'
miRNA:   3'- gCUGGCGGU-CG--AGCuGCUGuGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 13173 0.66 0.473517
Target:  5'- gCGACCGUCGGCggcgCGgGCGugGaaGAUGu -3'
miRNA:   3'- -GCUGGCGGUCGa---GC-UGCugUggCUGC- -5'
11989 3' -58.3 NC_003278.1 + 8663 0.66 0.473517
Target:  5'- gGACgGCCAcUUCGGCGccgcCACCGAgGa -3'
miRNA:   3'- gCUGgCGGUcGAGCUGCu---GUGGCUgC- -5'
11989 3' -58.3 NC_003278.1 + 32114 0.66 0.463513
Target:  5'- cCGGCCG-CGGCUCGccaGACGCgGgACGu -3'
miRNA:   3'- -GCUGGCgGUCGAGCug-CUGUGgC-UGC- -5'
11989 3' -58.3 NC_003278.1 + 28111 0.66 0.463513
Target:  5'- -cGCUGCgGGCgcggcaagugCGGCGACACCuGGCa -3'
miRNA:   3'- gcUGGCGgUCGa---------GCUGCUGUGG-CUGc -5'
11989 3' -58.3 NC_003278.1 + 30616 0.66 0.463513
Target:  5'- uCGACgGCCuuGUauUCGAUGAacuuuGCCGGCGg -3'
miRNA:   3'- -GCUGgCGGu-CG--AGCUGCUg----UGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 22139 0.66 0.453622
Target:  5'- uCGGCCugGCCcauGgUCGAgGGCACCgGACGc -3'
miRNA:   3'- -GCUGG--CGGu--CgAGCUgCUGUGG-CUGC- -5'
11989 3' -58.3 NC_003278.1 + 23019 0.66 0.453622
Target:  5'- aGGCCGCUGGCagucUUGcCGcCACCGGCc -3'
miRNA:   3'- gCUGGCGGUCG----AGCuGCuGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 22281 0.66 0.443846
Target:  5'- aCGGCCGCaccgaucugcuCGGCUCGGuccuCGGuacCGCCGGCa -3'
miRNA:   3'- -GCUGGCG-----------GUCGAGCU----GCU---GUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 21260 0.66 0.443846
Target:  5'- uCGACCuGCCGGCgCGcuucaGCGACuuCGGCa -3'
miRNA:   3'- -GCUGG-CGGUCGaGC-----UGCUGugGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.