miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11999 5' -65.4 NC_003278.1 + 22001 0.71 0.075273
Target:  5'- aGCCGCauCGGU-GCCCaGCCgGCGCGCc -3'
miRNA:   3'- gCGGCG--GCCGuUGGGgUGGgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 19834 0.71 0.077379
Target:  5'- uGUCGCCGGUguacAugCCCGuCgCGCGUGCc -3'
miRNA:   3'- gCGGCGGCCG----UugGGGU-GgGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 22986 0.71 0.081536
Target:  5'- gCGCUGCCGcacauCAACCUCACCCGCcaggaugGCGa -3'
miRNA:   3'- -GCGGCGGCc----GUUGGGGUGGGCG-------CGCg -5'
11999 5' -65.4 NC_003278.1 + 3488 0.71 0.084039
Target:  5'- uGCCG-UGGUAGCCCUGggcagUCCGCGCGUu -3'
miRNA:   3'- gCGGCgGCCGUUGGGGU-----GGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 14904 0.7 0.088779
Target:  5'- uGCCaGCCGGCuugcAGCgCCCAUCaCGCucaGCGCg -3'
miRNA:   3'- gCGG-CGGCCG----UUG-GGGUGG-GCG---CGCG- -5'
11999 5' -65.4 NC_003278.1 + 23254 0.7 0.088779
Target:  5'- aCGCUGuaGGCggUUCCACUCG-GCGCg -3'
miRNA:   3'- -GCGGCggCCGuuGGGGUGGGCgCGCG- -5'
11999 5' -65.4 NC_003278.1 + 28290 0.7 0.088779
Target:  5'- aGCCGCgGGCAuggGCCagguaCGCCCGgGCcgagGCg -3'
miRNA:   3'- gCGGCGgCCGU---UGGg----GUGGGCgCG----CG- -5'
11999 5' -65.4 NC_003278.1 + 32306 0.7 0.091244
Target:  5'- aCGCCGCCGGCccGAUgCa--CCGUGUGCc -3'
miRNA:   3'- -GCGGCGGCCG--UUGgGgugGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 5682 0.7 0.091244
Target:  5'- gCGCCG-CGGCuACCaCCAaCCGCGcCGCc -3'
miRNA:   3'- -GCGGCgGCCGuUGG-GGUgGGCGC-GCG- -5'
11999 5' -65.4 NC_003278.1 + 28214 0.7 0.091244
Target:  5'- cCGCCGCCucGGCccgggcguaccuGGCCCaUGCCCGCG-GCu -3'
miRNA:   3'- -GCGGCGG--CCG------------UUGGG-GUGGGCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 6035 0.7 0.091244
Target:  5'- uGCCGCCGGUGgaaguGCCCUacguGCCCGagaaGgGCc -3'
miRNA:   3'- gCGGCGGCCGU-----UGGGG----UGGGCg---CgCG- -5'
11999 5' -65.4 NC_003278.1 + 8994 0.7 0.096368
Target:  5'- cCG-CGCUGGUgAACCCuCGCCCGgGCGg -3'
miRNA:   3'- -GCgGCGGCCG-UUGGG-GUGGGCgCGCg -5'
11999 5' -65.4 NC_003278.1 + 33843 0.7 0.099032
Target:  5'- uGCCGCCaGCGGCUuccgcggcuacaCCAgCCGCGUGg -3'
miRNA:   3'- gCGGCGGcCGUUGG------------GGUgGGCGCGCg -5'
11999 5' -65.4 NC_003278.1 + 31823 0.7 0.101488
Target:  5'- -cCCGCCgguuggcgggaGGCAACCCCggaggaaAUCCGCcGCGCc -3'
miRNA:   3'- gcGGCGG-----------CCGUUGGGG-------UGGGCG-CGCG- -5'
11999 5' -65.4 NC_003278.1 + 22890 0.7 0.101765
Target:  5'- aGCUGCaggauCGGCAGgCCCGCCagCGCcgGCGCg -3'
miRNA:   3'- gCGGCG-----GCCGUUgGGGUGG--GCG--CGCG- -5'
11999 5' -65.4 NC_003278.1 + 8333 0.7 0.101765
Target:  5'- uCGCCGCCcuGGCcuacAUCgCugCCGCGCuGCg -3'
miRNA:   3'- -GCGGCGG--CCGu---UGGgGugGGCGCG-CG- -5'
11999 5' -65.4 NC_003278.1 + 31123 0.7 0.101765
Target:  5'- gGCCGCCcuGGCccagcggacaAACaCCCGCCUG-GCGCc -3'
miRNA:   3'- gCGGCGG--CCG----------UUG-GGGUGGGCgCGCG- -5'
11999 5' -65.4 NC_003278.1 + 22037 0.7 0.104568
Target:  5'- gGUCG-CGGCGacgacgcgaucACCCUGCCCGgCGUGCu -3'
miRNA:   3'- gCGGCgGCCGU-----------UGGGGUGGGC-GCGCG- -5'
11999 5' -65.4 NC_003278.1 + 32507 0.7 0.104568
Target:  5'- uCGCCgGUCGcaGCAGCCCCACgaaCG-GCGCa -3'
miRNA:   3'- -GCGG-CGGC--CGUUGGGGUGg--GCgCGCG- -5'
11999 5' -65.4 NC_003278.1 + 29316 0.69 0.107445
Target:  5'- cCGCUGCCGGUgaaGAUCgCACCgGCG-GCc -3'
miRNA:   3'- -GCGGCGGCCG---UUGGgGUGGgCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.