miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11999 5' -65.4 NC_003278.1 + 19441 1.1 0.000056
Target:  5'- cCGCCGCCGGCAACCCCACCCGCGCGCu -3'
miRNA:   3'- -GCGGCGGCCGUUGGGGUGGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 9070 0.79 0.017932
Target:  5'- uGCCGCCGGCAuagCCGCCCGgGCGa -3'
miRNA:   3'- gCGGCGGCCGUuggGGUGGGCgCGCg -5'
11999 5' -65.4 NC_003278.1 + 22562 0.76 0.030741
Target:  5'- gGCUGCUcGCGAUCCC-CCCGCGCGg -3'
miRNA:   3'- gCGGCGGcCGUUGGGGuGGGCGCGCg -5'
11999 5' -65.4 NC_003278.1 + 15916 0.75 0.040755
Target:  5'- aCGCCGCCGGCGGuCUgUACUgGCGCuGCc -3'
miRNA:   3'- -GCGGCGGCCGUU-GGgGUGGgCGCG-CG- -5'
11999 5' -65.4 NC_003278.1 + 27906 0.74 0.044339
Target:  5'- gCGCuUGCCGcGCAGCCCCugCgGCGUauaGCg -3'
miRNA:   3'- -GCG-GCGGC-CGUUGGGGugGgCGCG---CG- -5'
11999 5' -65.4 NC_003278.1 + 20977 0.73 0.055465
Target:  5'- gGcCCGCUGGUGACCgC-CCUGCGCGUc -3'
miRNA:   3'- gC-GGCGGCCGUUGGgGuGGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 29112 0.73 0.057034
Target:  5'- aCGCCGCCGGCuugcugcaGGgCCUugUCGCGCa- -3'
miRNA:   3'- -GCGGCGGCCG--------UUgGGGugGGCGCGcg -5'
11999 5' -65.4 NC_003278.1 + 8812 0.73 0.058646
Target:  5'- uCGCCGCCGGagcucGCCUCgACCUGC-CGCu -3'
miRNA:   3'- -GCGGCGGCCgu---UGGGG-UGGGCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 19232 0.73 0.060301
Target:  5'- uCGCCaUCGGCGgaACUCCguACCCGgGCGCg -3'
miRNA:   3'- -GCGGcGGCCGU--UGGGG--UGGGCgCGCG- -5'
11999 5' -65.4 NC_003278.1 + 4062 0.72 0.062002
Target:  5'- aCGCUGUCGGCccggUCCCAUCCGuCGCGg -3'
miRNA:   3'- -GCGGCGGCCGuu--GGGGUGGGC-GCGCg -5'
11999 5' -65.4 NC_003278.1 + 14752 0.72 0.062002
Target:  5'- -aCCGCCGGCAgcaACCCgACCaCGCuGgGCg -3'
miRNA:   3'- gcGGCGGCCGU---UGGGgUGG-GCG-CgCG- -5'
11999 5' -65.4 NC_003278.1 + 29914 0.72 0.067201
Target:  5'- aGaCCGCCGGCAacgagaccuacgaGCCCCcuUCCGCG-GCa -3'
miRNA:   3'- gC-GGCGGCCGU-------------UGGGGu-GGGCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 6962 0.72 0.067388
Target:  5'- aGCCGuUCGGCGGCCuCCAaauccuucuuCCCGC-CGCa -3'
miRNA:   3'- gCGGC-GGCCGUUGG-GGU----------GGGCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 32556 0.72 0.06909
Target:  5'- gCGCgCGCCGGCAaacGCCCUGCaauaccagcaguaCgGCGUGCg -3'
miRNA:   3'- -GCG-GCGGCCGU---UGGGGUG-------------GgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 21473 0.72 0.069281
Target:  5'- uCGgCGCCGGcCAGgCCgGCCCGCuGgGCg -3'
miRNA:   3'- -GCgGCGGCC-GUUgGGgUGGGCG-CgCG- -5'
11999 5' -65.4 NC_003278.1 + 23018 0.72 0.071226
Target:  5'- gGCCGCUGGCAgucuuGCCgCCACCgGC-CGg -3'
miRNA:   3'- gCGGCGGCCGU-----UGG-GGUGGgCGcGCg -5'
11999 5' -65.4 NC_003278.1 + 86 0.72 0.071226
Target:  5'- gGCCGCauCGGCucaUUCGCCgGCGCGCg -3'
miRNA:   3'- gCGGCG--GCCGuugGGGUGGgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 29876 0.72 0.071226
Target:  5'- gCGCCGCCGGCGcgGCUgUugUCGCuGCGg -3'
miRNA:   3'- -GCGGCGGCCGU--UGGgGugGGCG-CGCg -5'
11999 5' -65.4 NC_003278.1 + 32258 0.72 0.071226
Target:  5'- gCGCCGUCGGCGAcauCCUCGgCCGCaUGCc -3'
miRNA:   3'- -GCGGCGGCCGUU---GGGGUgGGCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 29252 0.72 0.073223
Target:  5'- gGCCGCCGGUgcGAUCuUCACCggcagcgGCGCGCa -3'
miRNA:   3'- gCGGCGGCCG--UUGG-GGUGGg------CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.