miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11999 5' -65.4 NC_003278.1 + 8994 0.7 0.096368
Target:  5'- cCG-CGCUGGUgAACCCuCGCCCGgGCGg -3'
miRNA:   3'- -GCgGCGGCCG-UUGGG-GUGGGCgCGCg -5'
11999 5' -65.4 NC_003278.1 + 22001 0.71 0.075273
Target:  5'- aGCCGCauCGGU-GCCCaGCCgGCGCGCc -3'
miRNA:   3'- gCGGCG--GCCGuUGGGgUGGgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 22986 0.71 0.081536
Target:  5'- gCGCUGCCGcacauCAACCUCACCCGCcaggaugGCGa -3'
miRNA:   3'- -GCGGCGGCc----GUUGGGGUGGGCG-------CGCg -5'
11999 5' -65.4 NC_003278.1 + 3488 0.71 0.084039
Target:  5'- uGCCG-UGGUAGCCCUGggcagUCCGCGCGUu -3'
miRNA:   3'- gCGGCgGCCGUUGGGGU-----GGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 14904 0.7 0.088779
Target:  5'- uGCCaGCCGGCuugcAGCgCCCAUCaCGCucaGCGCg -3'
miRNA:   3'- gCGG-CGGCCG----UUG-GGGUGG-GCG---CGCG- -5'
11999 5' -65.4 NC_003278.1 + 6035 0.7 0.091244
Target:  5'- uGCCGCCGGUGgaaguGCCCUacguGCCCGagaaGgGCc -3'
miRNA:   3'- gCGGCGGCCGU-----UGGGG----UGGGCg---CgCG- -5'
11999 5' -65.4 NC_003278.1 + 28214 0.7 0.091244
Target:  5'- cCGCCGCCucGGCccgggcguaccuGGCCCaUGCCCGCG-GCu -3'
miRNA:   3'- -GCGGCGG--CCG------------UUGGG-GUGGGCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 5682 0.7 0.091244
Target:  5'- gCGCCG-CGGCuACCaCCAaCCGCGcCGCc -3'
miRNA:   3'- -GCGGCgGCCGuUGG-GGUgGGCGC-GCG- -5'
11999 5' -65.4 NC_003278.1 + 32306 0.7 0.091244
Target:  5'- aCGCCGCCGGCccGAUgCa--CCGUGUGCc -3'
miRNA:   3'- -GCGGCGGCCG--UUGgGgugGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 29252 0.72 0.073223
Target:  5'- gGCCGCCGGUgcGAUCuUCACCggcagcgGCGCGCa -3'
miRNA:   3'- gCGGCGGCCG--UUGG-GGUGGg------CGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 32258 0.72 0.071226
Target:  5'- gCGCCGUCGGCGAcauCCUCGgCCGCaUGCc -3'
miRNA:   3'- -GCGGCGGCCGUU---GGGGUgGGCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 21473 0.72 0.069281
Target:  5'- uCGgCGCCGGcCAGgCCgGCCCGCuGgGCg -3'
miRNA:   3'- -GCgGCGGCC-GUUgGGgUGGGCG-CgCG- -5'
11999 5' -65.4 NC_003278.1 + 22562 0.76 0.030741
Target:  5'- gGCUGCUcGCGAUCCC-CCCGCGCGg -3'
miRNA:   3'- gCGGCGGcCGUUGGGGuGGGCGCGCg -5'
11999 5' -65.4 NC_003278.1 + 15916 0.75 0.040755
Target:  5'- aCGCCGCCGGCGGuCUgUACUgGCGCuGCc -3'
miRNA:   3'- -GCGGCGGCCGUU-GGgGUGGgCGCG-CG- -5'
11999 5' -65.4 NC_003278.1 + 20977 0.73 0.055465
Target:  5'- gGcCCGCUGGUGACCgC-CCUGCGCGUc -3'
miRNA:   3'- gC-GGCGGCCGUUGGgGuGGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 8812 0.73 0.058646
Target:  5'- uCGCCGCCGGagcucGCCUCgACCUGC-CGCu -3'
miRNA:   3'- -GCGGCGGCCgu---UGGGG-UGGGCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 4062 0.72 0.062002
Target:  5'- aCGCUGUCGGCccggUCCCAUCCGuCGCGg -3'
miRNA:   3'- -GCGGCGGCCGuu--GGGGUGGGC-GCGCg -5'
11999 5' -65.4 NC_003278.1 + 14752 0.72 0.062002
Target:  5'- -aCCGCCGGCAgcaACCCgACCaCGCuGgGCg -3'
miRNA:   3'- gcGGCGGCCGU---UGGGgUGG-GCG-CgCG- -5'
11999 5' -65.4 NC_003278.1 + 29914 0.72 0.067201
Target:  5'- aGaCCGCCGGCAacgagaccuacgaGCCCCcuUCCGCG-GCa -3'
miRNA:   3'- gC-GGCGGCCGU-------------UGGGGu-GGGCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 32556 0.72 0.06909
Target:  5'- gCGCgCGCCGGCAaacGCCCUGCaauaccagcaguaCgGCGUGCg -3'
miRNA:   3'- -GCG-GCGGCCGU---UGGGGUG-------------GgCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.