miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11999 5' -65.4 NC_003278.1 + 86 0.72 0.071226
Target:  5'- gGCCGCauCGGCucaUUCGCCgGCGCGCg -3'
miRNA:   3'- gCGGCG--GCCGuugGGGUGGgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 2482 0.66 0.18806
Target:  5'- cCGCCGCCaGCAGCCaguuacaguccaguCCGCCCagGaaggcgaguucauccCGCGCc -3'
miRNA:   3'- -GCGGCGGcCGUUGG--------------GGUGGG--C---------------GCGCG- -5'
11999 5' -65.4 NC_003278.1 + 2554 0.66 0.191981
Target:  5'- aGCCGCUcgaggGGCAGaCCCCcgcgaauACCgGC-CGCa -3'
miRNA:   3'- gCGGCGG-----CCGUU-GGGG-------UGGgCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 2577 0.68 0.125304
Target:  5'- uGCgGCCGGCGguauaggugaacugGCgCCCACCgGC-CGUg -3'
miRNA:   3'- gCGgCGGCCGU--------------UG-GGGUGGgCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 2703 0.67 0.173526
Target:  5'- aCGCCgGCUGGacCGACCUgGCCCaG-GCGCu -3'
miRNA:   3'- -GCGG-CGGCC--GUUGGGgUGGG-CgCGCG- -5'
11999 5' -65.4 NC_003278.1 + 2980 0.67 0.164688
Target:  5'- gCGCCuCCGGCGGuaCCGggcggcaaguUCCGCGUGCu -3'
miRNA:   3'- -GCGGcGGCCGUUggGGU----------GGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 3309 0.69 0.119707
Target:  5'- gGCgGCCGGCuuGCCCUugUUGaaGCGCu -3'
miRNA:   3'- gCGgCGGCCGu-UGGGGugGGCg-CGCG- -5'
11999 5' -65.4 NC_003278.1 + 3488 0.71 0.084039
Target:  5'- uGCCG-UGGUAGCCCUGggcagUCCGCGCGUu -3'
miRNA:   3'- gCGGCgGCCGUUGGGGU-----GGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 3541 0.68 0.135414
Target:  5'- gCGCCGuUCGGCAggaugaucgggucGCCCUucaguucgacaccuACCgcauCGCGCGCg -3'
miRNA:   3'- -GCGGC-GGCCGU-------------UGGGG--------------UGG----GCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 4062 0.72 0.062002
Target:  5'- aCGCUGUCGGCccggUCCCAUCCGuCGCGg -3'
miRNA:   3'- -GCGGCGGCCGuu--GGGGUGGGC-GCGCg -5'
11999 5' -65.4 NC_003278.1 + 4256 0.66 0.207858
Target:  5'- aCGCUGCCGuCGAaauUCCCAUCCGUGacaacCGCc -3'
miRNA:   3'- -GCGGCGGCcGUU---GGGGUGGGCGC-----GCG- -5'
11999 5' -65.4 NC_003278.1 + 4262 0.68 0.138332
Target:  5'- gCGCCGCCccuuGUAGCuccgcgcccuacaauCCCGCuugauugcugggCCGCGCGCg -3'
miRNA:   3'- -GCGGCGGc---CGUUG---------------GGGUG------------GGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 4412 0.66 0.207858
Target:  5'- uCGCCGUCgaaggGGCGACCacggaCGgCCGCaacaucgaGCGCg -3'
miRNA:   3'- -GCGGCGG-----CCGUUGGg----GUgGGCG--------CGCG- -5'
11999 5' -65.4 NC_003278.1 + 4473 0.67 0.173526
Target:  5'- gGCCGCgCaGUacGACCCgaaCACCUacgGCGCGCg -3'
miRNA:   3'- gCGGCG-GcCG--UUGGG---GUGGG---CGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 4594 0.66 0.182784
Target:  5'- gCGCCgaacucaccaGCCGGcCAGgCCCACuuGaUGUGCu -3'
miRNA:   3'- -GCGG----------CGGCC-GUUgGGGUGggC-GCGCG- -5'
11999 5' -65.4 NC_003278.1 + 5682 0.7 0.091244
Target:  5'- gCGCCG-CGGCuACCaCCAaCCGCGcCGCc -3'
miRNA:   3'- -GCGGCgGCCGuUGG-GGUgGGCGC-GCG- -5'
11999 5' -65.4 NC_003278.1 + 6035 0.7 0.091244
Target:  5'- uGCCGCCGGUGgaaguGCCCUacguGCCCGagaaGgGCc -3'
miRNA:   3'- gCGGCGGCCGU-----UGGGG----UGGGCg---CgCG- -5'
11999 5' -65.4 NC_003278.1 + 6082 0.66 0.192476
Target:  5'- -uCCaCCGGCGGCaggCCGCCCaUGCGCu -3'
miRNA:   3'- gcGGcGGCCGUUGg--GGUGGGcGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 6298 0.69 0.121003
Target:  5'- cCGCCGCucaagaggCGGCGGCCaCUGcCCCGCaccagggcauggaagGCGCg -3'
miRNA:   3'- -GCGGCG--------GCCGUUGG-GGU-GGGCG---------------CGCG- -5'
11999 5' -65.4 NC_003278.1 + 6448 0.66 0.207858
Target:  5'- uGCUGCCGGUcuaccAGCCgUAcauuuCCgGCGUGCu -3'
miRNA:   3'- gCGGCGGCCG-----UUGGgGU-----GGgCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.