Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12022 | 3' | -57.5 | NC_003278.1 | + | 26631 | 0.72 | 0.190964 |
Target: 5'- cGCCGAUGAUCgcgCuGACCACCUGGcGCc -3' miRNA: 3'- uCGGCUGUUGGa--G-UUGGUGGACC-CGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 2155 | 0.72 | 0.207232 |
Target: 5'- uGGCuCGGCAuACCUCGAgcagccucguucUCGCCUGGGUa -3' miRNA: 3'- -UCG-GCUGU-UGGAGUU------------GGUGGACCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 31722 | 0.71 | 0.212915 |
Target: 5'- cGGCCGGCcuccgcGACUUCGAgCGCCUGGcCGg -3' miRNA: 3'- -UCGGCUG------UUGGAGUUgGUGGACCcGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 29591 | 0.71 | 0.224683 |
Target: 5'- cGCCGAagcagguccaCAGCCagucCAGCCACUcgGGGCGg -3' miRNA: 3'- uCGGCU----------GUUGGa---GUUGGUGGa-CCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 9067 | 0.71 | 0.236999 |
Target: 5'- cGCCGGCA----UAGCCGCCcGGGCGa -3' miRNA: 3'- uCGGCUGUuggaGUUGGUGGaCCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 7021 | 0.7 | 0.242723 |
Target: 5'- gAGCCGGCGgggcgcgggguacGCUcggUCAACCGCCaGaGGCGg -3' miRNA: 3'- -UCGGCUGU-------------UGG---AGUUGGUGGaC-CCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 8641 | 0.7 | 0.249875 |
Target: 5'- gGGCCGGCGccaACCUCuacgaggacGGCCACUUcGGCGc -3' miRNA: 3'- -UCGGCUGU---UGGAG---------UUGGUGGAcCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 8286 | 0.7 | 0.252519 |
Target: 5'- cAGgCGACcGCCUUgaggcugaggggaauGACCACCaGGGCGc -3' miRNA: 3'- -UCgGCUGuUGGAG---------------UUGGUGGaCCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 17875 | 0.7 | 0.256527 |
Target: 5'- cGgCGAUAGugUCGGCCagcACCUGGGCGg -3' miRNA: 3'- uCgGCUGUUggAGUUGG---UGGACCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 6198 | 0.7 | 0.256527 |
Target: 5'- cGUCGAggacuaCGGCCUCGGCUGCCUGGuCGa -3' miRNA: 3'- uCGGCU------GUUGGAGUUGGUGGACCcGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 13367 | 0.7 | 0.263323 |
Target: 5'- gAGCCGAUA--CUCGauGCCGCCcGGGCc -3' miRNA: 3'- -UCGGCUGUugGAGU--UGGUGGaCCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 28088 | 0.7 | 0.263323 |
Target: 5'- uGGUCGACAGCCccugguUCAuCCGCUgcGGGCGc -3' miRNA: 3'- -UCGGCUGUUGG------AGUuGGUGGa-CCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 30431 | 0.7 | 0.277354 |
Target: 5'- uAGUCGuaGACCUCccagaacucGGCCACCUcGGGCGc -3' miRNA: 3'- -UCGGCugUUGGAG---------UUGGUGGA-CCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 9549 | 0.7 | 0.277354 |
Target: 5'- cGCUGGCuuuCCUCGccaACUcgGCCUGGGCc -3' miRNA: 3'- uCGGCUGuu-GGAGU---UGG--UGGACCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 7863 | 0.69 | 0.28459 |
Target: 5'- aGGCCGugGuucGCCUCGaggACCGCCUcGGUc -3' miRNA: 3'- -UCGGCugU---UGGAGU---UGGUGGAcCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 14646 | 0.69 | 0.291974 |
Target: 5'- aAGUccgCGGCAACCUUcGCCGuccccaguCCUGGGUGg -3' miRNA: 3'- -UCG---GCUGUUGGAGuUGGU--------GGACCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 31572 | 0.69 | 0.291974 |
Target: 5'- uGGCCcacucGACAGCCUUGGCCugUU-GGCGa -3' miRNA: 3'- -UCGG-----CUGUUGGAGUUGGugGAcCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 10380 | 0.69 | 0.299507 |
Target: 5'- cGGCCcauCGACCUCGAUgGCCUcGGUGa -3' miRNA: 3'- -UCGGcu-GUUGGAGUUGgUGGAcCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 5006 | 0.69 | 0.30719 |
Target: 5'- cGCCGAgcaCAGCC---GCgACCUGGGUGa -3' miRNA: 3'- uCGGCU---GUUGGaguUGgUGGACCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 5975 | 0.69 | 0.30719 |
Target: 5'- cAGCCGGCAACCgaaagaucgccacCGACCucauCCugucgcagaagcgcaUGGGCGg -3' miRNA: 3'- -UCGGCUGUUGGa------------GUUGGu---GG---------------ACCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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