miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12022 3' -57.5 NC_003278.1 + 30063 1.08 0.000383
Target:  5'- cAGCCGACAACCUCAACCACCUGGGCGu -3'
miRNA:   3'- -UCGGCUGUUGGAGUUGGUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 21234 0.84 0.026264
Target:  5'- cGCCGGCGuCCUgGGCUACCUGGGCa -3'
miRNA:   3'- uCGGCUGUuGGAgUUGGUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 14754 0.84 0.027066
Target:  5'- cGCCGGCAgcaACC-CGACCACgCUGGGCGg -3'
miRNA:   3'- uCGGCUGU---UGGaGUUGGUG-GACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 13893 0.79 0.058855
Target:  5'- gAGCCGACGGgCUCGACCACgCggcgcaGGGCGc -3'
miRNA:   3'- -UCGGCUGUUgGAGUUGGUG-Ga-----CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 33914 0.78 0.074287
Target:  5'- aGGCCGACAGCaUCGACCACUggauauucaagacUGGGUGc -3'
miRNA:   3'- -UCGGCUGUUGgAGUUGGUGG-------------ACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 20301 0.78 0.077627
Target:  5'- uGGCCGGC-ACCUCGaugcgcucuguucugAcCCGCCUGGGCa -3'
miRNA:   3'- -UCGGCUGuUGGAGU---------------U-GGUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 4195 0.77 0.08111
Target:  5'- gGGCUGGCGugucugcgacaucGCC--GACCACCUGGGCGa -3'
miRNA:   3'- -UCGGCUGU-------------UGGagUUGGUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 26807 0.77 0.09141
Target:  5'- -cUCGACAACCUCGACCuguacGCCagGGGCGu -3'
miRNA:   3'- ucGGCUGUUGGAGUUGG-----UGGa-CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 33275 0.76 0.10874
Target:  5'- cGCCGGCGaugGCCUCGGCCGCagccGGCGg -3'
miRNA:   3'- uCGGCUGU---UGGAGUUGGUGgac-CCGC- -5'
12022 3' -57.5 NC_003278.1 + 20710 0.74 0.129115
Target:  5'- cGCCGcCGACCUCAGUCACCUGcugcacaacaucGGCGa -3'
miRNA:   3'- uCGGCuGUUGGAGUUGGUGGAC------------CCGC- -5'
12022 3' -57.5 NC_003278.1 + 22870 0.74 0.132837
Target:  5'- gAGuCCGACGccaACCUgcUGACaCGCCUGGGCGa -3'
miRNA:   3'- -UC-GGCUGU---UGGA--GUUG-GUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 13366 0.74 0.136657
Target:  5'- cGUCGACAcgguaCUCGAgCACUUGGGCGg -3'
miRNA:   3'- uCGGCUGUug---GAGUUgGUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 32353 0.74 0.144603
Target:  5'- gGGCCGGCGGCgUCGauAUCGCC-GGGCa -3'
miRNA:   3'- -UCGGCUGUUGgAGU--UGGUGGaCCCGc -5'
12022 3' -57.5 NC_003278.1 + 10194 0.73 0.152968
Target:  5'- aGGCCGACAugCUCGACCGCagcaaGGuCGa -3'
miRNA:   3'- -UCGGCUGUugGAGUUGGUGgac--CC-GC- -5'
12022 3' -57.5 NC_003278.1 + 20022 0.73 0.157313
Target:  5'- uGcCCGGCAugCUCAACCuggcaGCCgcGGGCGa -3'
miRNA:   3'- uC-GGCUGUugGAGUUGG-----UGGa-CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 10447 0.73 0.16177
Target:  5'- uGGCUGACAGCCUCGagGCUcuggaagaCUGGGCa -3'
miRNA:   3'- -UCGGCUGUUGGAGU--UGGug------GACCCGc -5'
12022 3' -57.5 NC_003278.1 + 2625 0.73 0.171026
Target:  5'- uGCgGAUAGCCaUCAG-CGCCUGGGCc -3'
miRNA:   3'- uCGgCUGUUGG-AGUUgGUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 14003 0.72 0.180752
Target:  5'- cAGCCGAC-ACCUgAcCCGCCUGGaccuGCGc -3'
miRNA:   3'- -UCGGCUGuUGGAgUuGGUGGACC----CGC- -5'
12022 3' -57.5 NC_003278.1 + 27453 0.72 0.180752
Target:  5'- uGGCCGaACAACUcgccCAGCgCGCCUGGGaCGa -3'
miRNA:   3'- -UCGGC-UGUUGGa---GUUG-GUGGACCC-GC- -5'
12022 3' -57.5 NC_003278.1 + 21623 0.72 0.190964
Target:  5'- uGCUGGcCAugCUgGGCgACCUGGGCa -3'
miRNA:   3'- uCGGCU-GUugGAgUUGgUGGACCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.