Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12022 | 3' | -57.5 | NC_003278.1 | + | 5006 | 0.69 | 0.30719 |
Target: 5'- cGCCGAgcaCAGCC---GCgACCUGGGUGa -3' miRNA: 3'- uCGGCU---GUUGGaguUGgUGGACCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 27453 | 0.72 | 0.180752 |
Target: 5'- uGGCCGaACAACUcgccCAGCgCGCCUGGGaCGa -3' miRNA: 3'- -UCGGC-UGUUGGa---GUUG-GUGGACCC-GC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 14003 | 0.72 | 0.180752 |
Target: 5'- cAGCCGAC-ACCUgAcCCGCCUGGaccuGCGc -3' miRNA: 3'- -UCGGCUGuUGGAgUuGGUGGACC----CGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 21623 | 0.72 | 0.190964 |
Target: 5'- uGCUGGcCAugCUgGGCgACCUGGGCa -3' miRNA: 3'- uCGGCU-GUugGAgUUGgUGGACCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 31722 | 0.71 | 0.212915 |
Target: 5'- cGGCCGGCcuccgcGACUUCGAgCGCCUGGcCGg -3' miRNA: 3'- -UCGGCUG------UUGGAGUUgGUGGACCcGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 8641 | 0.7 | 0.249875 |
Target: 5'- gGGCCGGCGccaACCUCuacgaggacGGCCACUUcGGCGc -3' miRNA: 3'- -UCGGCUGU---UGGAG---------UUGGUGGAcCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 6198 | 0.7 | 0.256527 |
Target: 5'- cGUCGAggacuaCGGCCUCGGCUGCCUGGuCGa -3' miRNA: 3'- uCGGCU------GUUGGAGUUGGUGGACCcGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 28088 | 0.7 | 0.263323 |
Target: 5'- uGGUCGACAGCCccugguUCAuCCGCUgcGGGCGc -3' miRNA: 3'- -UCGGCUGUUGG------AGUuGGUGGa-CCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 13367 | 0.7 | 0.263323 |
Target: 5'- gAGCCGAUA--CUCGauGCCGCCcGGGCc -3' miRNA: 3'- -UCGGCUGUugGAGU--UGGUGGaCCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 2625 | 0.73 | 0.171026 |
Target: 5'- uGCgGAUAGCCaUCAG-CGCCUGGGCc -3' miRNA: 3'- uCGgCUGUUGG-AGUUgGUGGACCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 10447 | 0.73 | 0.16177 |
Target: 5'- uGGCUGACAGCCUCGagGCUcuggaagaCUGGGCa -3' miRNA: 3'- -UCGGCUGUUGGAGU--UGGug------GACCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 20022 | 0.73 | 0.157313 |
Target: 5'- uGcCCGGCAugCUCAACCuggcaGCCgcGGGCGa -3' miRNA: 3'- uC-GGCUGUugGAGUUGG-----UGGa-CCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 21234 | 0.84 | 0.026264 |
Target: 5'- cGCCGGCGuCCUgGGCUACCUGGGCa -3' miRNA: 3'- uCGGCUGUuGGAgUUGGUGGACCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 14754 | 0.84 | 0.027066 |
Target: 5'- cGCCGGCAgcaACC-CGACCACgCUGGGCGg -3' miRNA: 3'- uCGGCUGU---UGGaGUUGGUG-GACCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 33914 | 0.78 | 0.074287 |
Target: 5'- aGGCCGACAGCaUCGACCACUggauauucaagacUGGGUGc -3' miRNA: 3'- -UCGGCUGUUGgAGUUGGUGG-------------ACCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 20301 | 0.78 | 0.077627 |
Target: 5'- uGGCCGGC-ACCUCGaugcgcucuguucugAcCCGCCUGGGCa -3' miRNA: 3'- -UCGGCUGuUGGAGU---------------U-GGUGGACCCGc -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 26807 | 0.77 | 0.09141 |
Target: 5'- -cUCGACAACCUCGACCuguacGCCagGGGCGu -3' miRNA: 3'- ucGGCUGUUGGAGUUGG-----UGGa-CCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 20710 | 0.74 | 0.129115 |
Target: 5'- cGCCGcCGACCUCAGUCACCUGcugcacaacaucGGCGa -3' miRNA: 3'- uCGGCuGUUGGAGUUGGUGGAC------------CCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 22870 | 0.74 | 0.132837 |
Target: 5'- gAGuCCGACGccaACCUgcUGACaCGCCUGGGCGa -3' miRNA: 3'- -UC-GGCUGU---UGGA--GUUG-GUGGACCCGC- -5' |
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12022 | 3' | -57.5 | NC_003278.1 | + | 10194 | 0.73 | 0.152968 |
Target: 5'- aGGCCGACAugCUCGACCGCagcaaGGuCGa -3' miRNA: 3'- -UCGGCUGUugGAGUUGGUGgac--CC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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