miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12022 3' -57.5 NC_003278.1 + 2155 0.72 0.207232
Target:  5'- uGGCuCGGCAuACCUCGAgcagccucguucUCGCCUGGGUa -3'
miRNA:   3'- -UCG-GCUGU-UGGAGUU------------GGUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 2371 0.69 0.3222
Target:  5'- cGGCCGggGCAuCCUCGACUaucucgagugcugGCCgaacGGGCGg -3'
miRNA:   3'- -UCGGC--UGUuGGAGUUGG-------------UGGa---CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 2619 0.68 0.347851
Target:  5'- cGGCCgcaacGACAACaC-CGGCCacgccgaucugGCCUGGGCGc -3'
miRNA:   3'- -UCGG-----CUGUUG-GaGUUGG-----------UGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 2625 0.73 0.171026
Target:  5'- uGCgGAUAGCCaUCAG-CGCCUGGGCc -3'
miRNA:   3'- uCGgCUGUUGG-AGUUgGUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 4195 0.77 0.08111
Target:  5'- gGGCUGGCGugucugcgacaucGCC--GACCACCUGGGCGa -3'
miRNA:   3'- -UCGGCUGU-------------UGGagUUGGUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 5006 0.69 0.30719
Target:  5'- cGCCGAgcaCAGCC---GCgACCUGGGUGa -3'
miRNA:   3'- uCGGCU---GUUGGaguUGgUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 5035 0.68 0.374032
Target:  5'- -uUCGACGGCCUC-GCCgACCUGGcCGa -3'
miRNA:   3'- ucGGCUGUUGGAGuUGG-UGGACCcGC- -5'
12022 3' -57.5 NC_003278.1 + 5639 0.68 0.365158
Target:  5'- cGCCaGGC--CCUCGACCGCCUGaugaucGGCu -3'
miRNA:   3'- uCGG-CUGuuGGAGUUGGUGGAC------CCGc -5'
12022 3' -57.5 NC_003278.1 + 5830 0.67 0.401518
Target:  5'- cGCCGACuacaagAACCUCGACgC-CCUGGuGUu -3'
miRNA:   3'- uCGGCUG------UUGGAGUUG-GuGGACC-CGc -5'
12022 3' -57.5 NC_003278.1 + 5910 0.67 0.383051
Target:  5'- uGCUGACcACgUCGAaCACCaGGGCGu -3'
miRNA:   3'- uCGGCUGuUGgAGUUgGUGGaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 5975 0.69 0.30719
Target:  5'- cAGCCGGCAACCgaaagaucgccacCGACCucauCCugucgcagaagcgcaUGGGCGg -3'
miRNA:   3'- -UCGGCUGUUGGa------------GUUGGu---GG---------------ACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 6198 0.7 0.256527
Target:  5'- cGUCGAggacuaCGGCCUCGGCUGCCUGGuCGa -3'
miRNA:   3'- uCGGCU------GUUGGAGUUGGUGGACCcGC- -5'
12022 3' -57.5 NC_003278.1 + 7021 0.7 0.242723
Target:  5'- gAGCCGGCGgggcgcgggguacGCUcggUCAACCGCCaGaGGCGg -3'
miRNA:   3'- -UCGGCUGU-------------UGG---AGUUGGUGGaC-CCGC- -5'
12022 3' -57.5 NC_003278.1 + 7425 0.66 0.450069
Target:  5'- cAGCgG-UAGCgCUCGGCCACUUcGGCGg -3'
miRNA:   3'- -UCGgCuGUUG-GAGUUGGUGGAcCCGC- -5'
12022 3' -57.5 NC_003278.1 + 7447 0.67 0.420541
Target:  5'- --aCGACuACCgccgCGACCAgCgCUGGGCGa -3'
miRNA:   3'- ucgGCUGuUGGa---GUUGGU-G-GACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 7863 0.69 0.28459
Target:  5'- aGGCCGugGuucGCCUCGaggACCGCCUcGGUc -3'
miRNA:   3'- -UCGGCugU---UGGAGU---UGGUGGAcCCGc -5'
12022 3' -57.5 NC_003278.1 + 7979 0.69 0.323005
Target:  5'- cGGCCG-C-GCCaUCAuggGCCucgGCCUGGGCGu -3'
miRNA:   3'- -UCGGCuGuUGG-AGU---UGG---UGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 8122 0.67 0.420541
Target:  5'- uGCCGACcuGCgUCGGCUACCUGuucGCa -3'
miRNA:   3'- uCGGCUGu-UGgAGUUGGUGGACc--CGc -5'
12022 3' -57.5 NC_003278.1 + 8251 0.67 0.401518
Target:  5'- gGGUCGACAaggucgACUUCGACgACCUcuGGCGc -3'
miRNA:   3'- -UCGGCUGU------UGGAGUUGgUGGAc-CCGC- -5'
12022 3' -57.5 NC_003278.1 + 8286 0.7 0.252519
Target:  5'- cAGgCGACcGCCUUgaggcugaggggaauGACCACCaGGGCGc -3'
miRNA:   3'- -UCgGCUGuUGGAG---------------UUGGUGGaCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.