Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12030 | 3' | -48.3 | NC_003278.1 | + | 18690 | 0.66 | 0.94889 |
Target: 5'- uCCUUGCCGuuGACcUUCUcGACGaAGUUCa -3' miRNA: 3'- -GGGACGGU--UUGuGAGA-UUGC-UCAAGg -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 21940 | 0.66 | 0.94889 |
Target: 5'- gCCUGC---ACACgCUGGCcaccaaGAGUUCCa -3' miRNA: 3'- gGGACGguuUGUGaGAUUG------CUCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 5567 | 0.66 | 0.94385 |
Target: 5'- aCCUacGCCAugcucGACGC-CUGGgccaaguucccCGAGUUCCa -3' miRNA: 3'- gGGA--CGGU-----UUGUGaGAUU-----------GCUCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 32732 | 0.66 | 0.938496 |
Target: 5'- aCUUGCCGAA-ACUCUGgccGCGGGgaUCg -3' miRNA: 3'- gGGACGGUUUgUGAGAU---UGCUCaaGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 20267 | 0.66 | 0.938496 |
Target: 5'- gCCCUGCUcgGCAacgCUGGCG---UCCa -3' miRNA: 3'- -GGGACGGuuUGUga-GAUUGCucaAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 23289 | 0.66 | 0.931062 |
Target: 5'- cCCCUGgCGAGCGCguagCUGagcguggcgcugccACGcuguaggcGGUUCCa -3' miRNA: 3'- -GGGACgGUUUGUGa---GAU--------------UGC--------UCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 31205 | 0.67 | 0.926836 |
Target: 5'- gCCCgccGCCAGGCuGCUCcgggcuGCGAGUgCUg -3' miRNA: 3'- -GGGa--CGGUUUG-UGAGau----UGCUCAaGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 31790 | 0.67 | 0.906957 |
Target: 5'- aCCgGCCAGGCGCUCgaagucGCGGaggCCg -3' miRNA: 3'- gGGaCGGUUUGUGAGau----UGCUcaaGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 17166 | 0.67 | 0.906957 |
Target: 5'- gCCUUGCCGAuggcagccuGCACguuggUGAUGAGUaCCg -3' miRNA: 3'- -GGGACGGUU---------UGUGag---AUUGCUCAaGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 7870 | 0.68 | 0.892134 |
Target: 5'- aCCaUGCCGGACAUUCcGACGGccgCCc -3' miRNA: 3'- gGG-ACGGUUUGUGAGaUUGCUcaaGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 35462 | 0.68 | 0.884263 |
Target: 5'- gCCC-GCCAAGC-CUgCUGGCuGGGgUCCg -3' miRNA: 3'- -GGGaCGGUUUGuGA-GAUUG-CUCaAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 18116 | 0.68 | 0.876094 |
Target: 5'- gCCUgacGCCcAGCGCUCcccgGACGGGgagCCg -3' miRNA: 3'- -GGGa--CGGuUUGUGAGa---UUGCUCaa-GG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 28652 | 0.68 | 0.876094 |
Target: 5'- gCUUGCCGccacgGGCugUC--GCGAGUUCg -3' miRNA: 3'- gGGACGGU-----UUGugAGauUGCUCAAGg -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 19358 | 0.68 | 0.867635 |
Target: 5'- -gCUGCuuCAGGCGCUC--GCGAGUUgCCu -3' miRNA: 3'- ggGACG--GUUUGUGAGauUGCUCAA-GG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 5019 | 0.68 | 0.867635 |
Target: 5'- aCCUgGCCGAACucgGCUUggguGCGGGcUUCCu -3' miRNA: 3'- gGGA-CGGUUUG---UGAGau--UGCUC-AAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 1926 | 0.68 | 0.858893 |
Target: 5'- gCCCUGCUGAACGagUCggccACGcuGUUCCg -3' miRNA: 3'- -GGGACGGUUUGUg-AGau--UGCu-CAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 33166 | 0.69 | 0.840598 |
Target: 5'- gCUCUGCa--GCGCg---GCGAGUUCCa -3' miRNA: 3'- -GGGACGguuUGUGagauUGCUCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 19923 | 0.69 | 0.811291 |
Target: 5'- aCCCUGCC--GCugUCcAGCaAGUUCa -3' miRNA: 3'- -GGGACGGuuUGugAGaUUGcUCAAGg -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 21263 | 0.7 | 0.801072 |
Target: 5'- aCCUGCCGGcGCGCUUcAGCGAcUUCg -3' miRNA: 3'- gGGACGGUU-UGUGAGaUUGCUcAAGg -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 18850 | 0.7 | 0.801072 |
Target: 5'- aCCCUGCgCAAGCccucCUCUGGCGAa---- -3' miRNA: 3'- -GGGACG-GUUUGu---GAGAUUGCUcaagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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