miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12031 3' -56.3 NC_003278.1 + 21057 0.66 0.553252
Target:  5'- --cGCCGucguGGCGGugcUGGCCGGCg-- -3'
miRNA:   3'- guaCGGCuu--CCGCUu--GCUGGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 28037 0.66 0.552149
Target:  5'- aCAUGCgCaAGGGCGAgugcccgACGugCGGCa-- -3'
miRNA:   3'- -GUACG-GcUUCCGCU-------UGCugGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 21629 0.66 0.552149
Target:  5'- cCAUGCUGGgcgaccuGGGCaaGAGCG-CCGGCg-- -3'
miRNA:   3'- -GUACGGCU-------UCCG--CUUGCuGGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 20891 0.66 0.542249
Target:  5'- aAUGCCGGcgaGGGUGAugGcaaGGCUGc -3'
miRNA:   3'- gUACGGCU---UCCGCUugCuggCCGACu -5'
12031 3' -56.3 NC_003278.1 + 9169 0.66 0.541153
Target:  5'- --cGCCGAguccaugGGGCGuAGCGAgUCGGCUc- -3'
miRNA:   3'- guaCGGCU-------UCCGC-UUGCU-GGCCGAcu -5'
12031 3' -56.3 NC_003278.1 + 29741 0.66 0.53132
Target:  5'- gAUGaCC-AAGGCGGgccuGCGccGCUGGCUGAc -3'
miRNA:   3'- gUAC-GGcUUCCGCU----UGC--UGGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 9334 0.66 0.53132
Target:  5'- --gGCCGuuguaGAGGCGGGCGAagUCGGCc-- -3'
miRNA:   3'- guaCGGC-----UUCCGCUUGCU--GGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 18544 0.66 0.53132
Target:  5'- uCGUGCCGGccGCGAACGACgauuucgaCGGacgUGAc -3'
miRNA:   3'- -GUACGGCUucCGCUUGCUG--------GCCg--ACU- -5'
12031 3' -56.3 NC_003278.1 + 7689 0.66 0.520471
Target:  5'- --cGCCu--GGgGAGCGACCGGUUu- -3'
miRNA:   3'- guaCGGcuuCCgCUUGCUGGCCGAcu -5'
12031 3' -56.3 NC_003278.1 + 6039 0.66 0.520471
Target:  5'- --gGUCGguGGCGAucuucuCGguuGCCGGCUGGu -3'
miRNA:   3'- guaCGGCuuCCGCUu-----GC---UGGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 32571 0.66 0.50971
Target:  5'- --cGCCGuucguGGGGCugcuGCGACCGGCg-- -3'
miRNA:   3'- guaCGGC-----UUCCGcu--UGCUGGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 22836 0.66 0.50971
Target:  5'- -uUGCCGAGGGCGAugucggugagcACGucGCCcagcgucuucgGGCUGc -3'
miRNA:   3'- guACGGCUUCCGCU-----------UGC--UGG-----------CCGACu -5'
12031 3' -56.3 NC_003278.1 + 30497 0.67 0.488477
Target:  5'- --cGCCaGAAGGUGGcCGACgCGGCa-- -3'
miRNA:   3'- guaCGG-CUUCCGCUuGCUG-GCCGacu -5'
12031 3' -56.3 NC_003278.1 + 20044 0.67 0.467669
Target:  5'- --aGCCGcGGGCGAcauggaccucgGCGACaCuGCUGAc -3'
miRNA:   3'- guaCGGCuUCCGCU-----------UGCUG-GcCGACU- -5'
12031 3' -56.3 NC_003278.1 + 7793 0.67 0.467669
Target:  5'- gCGUGaCCGAggcgguccucgAGGCGAaccACGGCCuGGCcGAc -3'
miRNA:   3'- -GUAC-GGCU-----------UCCGCU---UGCUGG-CCGaCU- -5'
12031 3' -56.3 NC_003278.1 + 33694 0.67 0.457437
Target:  5'- aAUGCCGAAcGGC---UGGCCGGCa-- -3'
miRNA:   3'- gUACGGCUU-CCGcuuGCUGGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 10410 0.67 0.446322
Target:  5'- uCAUGCuCGAgacgccgcagaucAGGCGccCGGCCaauGGCUGAc -3'
miRNA:   3'- -GUACG-GCU-------------UCCGCuuGCUGG---CCGACU- -5'
12031 3' -56.3 NC_003278.1 + 12322 0.69 0.353641
Target:  5'- --cGCCGuGGGUauGAcCGACCaGGCUGAu -3'
miRNA:   3'- guaCGGCuUCCG--CUuGCUGG-CCGACU- -5'
12031 3' -56.3 NC_003278.1 + 31711 0.7 0.296794
Target:  5'- -uUGCCGAcccGCGGACGcgcCCGGUUGAa -3'
miRNA:   3'- guACGGCUuc-CGCUUGCu--GGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 21429 0.71 0.288534
Target:  5'- --cGCCGAccuGGGCGGguucaccAUGGCCGGcCUGGc -3'
miRNA:   3'- guaCGGCU---UCCGCU-------UGCUGGCC-GACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.