miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12032 3' -61.8 NC_003278.1 + 33425 1.1 0.000097
Target:  5'- uCGCUGGCAACCCUGGCCGUCCUGGCCu -3'
miRNA:   3'- -GCGACCGUUGGGACCGGCAGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 8740 0.84 0.01285
Target:  5'- uCGCUGGCccgaaGACCCUGGCCGcCCUcGGCg -3'
miRNA:   3'- -GCGACCG-----UUGGGACCGGCaGGA-CCGg -5'
12032 3' -61.8 NC_003278.1 + 32813 0.74 0.071616
Target:  5'- cCGCgacaGCAaaugcACCCUGGCCGguaguaCUGGCCg -3'
miRNA:   3'- -GCGac--CGU-----UGGGACCGGCag----GACCGG- -5'
12032 3' -61.8 NC_003278.1 + 29796 0.73 0.084944
Target:  5'- gCGCaGGCccGCCUUGGUCaucuucgacggGUCCUGGCCu -3'
miRNA:   3'- -GCGaCCGu-UGGGACCGG-----------CAGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 22828 0.73 0.087384
Target:  5'- gCGCUGGCGGgCCU-GCCGaUCCUgcagcuggaccaGGCCa -3'
miRNA:   3'- -GCGACCGUUgGGAcCGGC-AGGA------------CCGG- -5'
12032 3' -61.8 NC_003278.1 + 20271 0.73 0.092466
Target:  5'- uGCUcGGCAACgCUGG-CGUCCagggcagcaUGGCCg -3'
miRNA:   3'- gCGA-CCGUUGgGACCgGCAGG---------ACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21439 0.72 0.097827
Target:  5'- gGCgGGUucACCaUGGCCGgCCUGGCCc -3'
miRNA:   3'- gCGaCCGu-UGGgACCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21532 0.72 0.10348
Target:  5'- aGCgGGCcGgCCUGGCCGgcgCCgaGGCCc -3'
miRNA:   3'- gCGaCCGuUgGGACCGGCa--GGa-CCGG- -5'
12032 3' -61.8 NC_003278.1 + 13693 0.71 0.118985
Target:  5'- uGCccGGUcGCCCUucuGCCGUaCCUGGCCu -3'
miRNA:   3'- gCGa-CCGuUGGGAc--CGGCA-GGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21022 0.71 0.122336
Target:  5'- gGcCUGGCcgccAACCC-GGUgGUCCUGGCa -3'
miRNA:   3'- gC-GACCG----UUGGGaCCGgCAGGACCGg -5'
12032 3' -61.8 NC_003278.1 + 14945 0.71 0.129302
Target:  5'- gGCUGGCAguggcugcguuGCCCguaaucgaGGCCGguaguagCCcGGCCg -3'
miRNA:   3'- gCGACCGU-----------UGGGa-------CCGGCa------GGaCCGG- -5'
12032 3' -61.8 NC_003278.1 + 12641 0.71 0.129302
Target:  5'- gGgUGGCGucaaucucaugaGCaCCUGGCCGgccaggUUCUGGCCg -3'
miRNA:   3'- gCgACCGU------------UG-GGACCGGC------AGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 14642 0.71 0.129302
Target:  5'- cCGC-GGCAACCUUcGCCGUCCccaguccugggUGGCg -3'
miRNA:   3'- -GCGaCCGUUGGGAcCGGCAGG-----------ACCGg -5'
12032 3' -61.8 NC_003278.1 + 11874 0.71 0.129302
Target:  5'- gGCUGGCuGCCUUGGgcaUCG-CCgcgGGCCg -3'
miRNA:   3'- gCGACCGuUGGGACC---GGCaGGa--CCGG- -5'
12032 3' -61.8 NC_003278.1 + 8723 0.71 0.13292
Target:  5'- uCGgUGGCGGCgCCgaagUGGCCGUCCucguagagguUGGCg -3'
miRNA:   3'- -GCgACCGUUG-GG----ACCGGCAGG----------ACCGg -5'
12032 3' -61.8 NC_003278.1 + 9610 0.7 0.140439
Target:  5'- uCGCgggaaagGGCGGCCUcgagGGCCGUgauggugccggCCUGGCg -3'
miRNA:   3'- -GCGa------CCGUUGGGa---CCGGCA-----------GGACCGg -5'
12032 3' -61.8 NC_003278.1 + 5049 0.7 0.148345
Target:  5'- uGCUcGGCGAUcgcuucgacggCCUcGCCGaCCUGGCCg -3'
miRNA:   3'- gCGA-CCGUUG-----------GGAcCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 13740 0.7 0.154119
Target:  5'- uCGCUGGgaCAGCaCCUGGCCGgagcgugugaagcgCCaGGUCa -3'
miRNA:   3'- -GCGACC--GUUG-GGACCGGCa-------------GGaCCGG- -5'
12032 3' -61.8 NC_003278.1 + 4725 0.7 0.156655
Target:  5'- ---cGGCAagGCCUacuUGGUCGgCCUGGCCa -3'
miRNA:   3'- gcgaCCGU--UGGG---ACCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 12986 0.69 0.174546
Target:  5'- aGCUGGuCGaggucagcGCCCUGGgCG--CUGGCCa -3'
miRNA:   3'- gCGACC-GU--------UGGGACCgGCagGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.