miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12032 3' -61.8 NC_003278.1 + 1299 0.67 0.252078
Target:  5'- uGCUGaCAaaGCCCUGGCCa-CaaGGCCa -3'
miRNA:   3'- gCGACcGU--UGGGACCGGcaGgaCCGG- -5'
12032 3' -61.8 NC_003278.1 + 2375 0.67 0.250153
Target:  5'- gGCacGGCcACCCUGGCgCGggaugaacucgccuUCCUGGgCg -3'
miRNA:   3'- gCGa-CCGuUGGGACCG-GC--------------AGGACCgG- -5'
12032 3' -61.8 NC_003278.1 + 3488 0.68 0.210253
Target:  5'- uGCcgUGGUAGCCCUGGgCaGUCCgcgcguugGuGCCg -3'
miRNA:   3'- gCG--ACCGUUGGGACCgG-CAGGa-------C-CGG- -5'
12032 3' -61.8 NC_003278.1 + 3922 0.68 0.199452
Target:  5'- cCGCccUGGUAGCgCUGGauCCGcgCCUGGCg -3'
miRNA:   3'- -GCG--ACCGUUGgGACC--GGCa-GGACCGg -5'
12032 3' -61.8 NC_003278.1 + 4194 0.67 0.245078
Target:  5'- gGCUGGCGugUCUGcgacaucGCCGaccaCCUGGgCg -3'
miRNA:   3'- gCGACCGUugGGAC-------CGGCa---GGACCgG- -5'
12032 3' -61.8 NC_003278.1 + 4725 0.7 0.156655
Target:  5'- ---cGGCAagGCCUacuUGGUCGgCCUGGCCa -3'
miRNA:   3'- gcgaCCGU--UGGG---ACCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 5049 0.7 0.148345
Target:  5'- uGCUcGGCGAUcgcuucgacggCCUcGCCGaCCUGGCCg -3'
miRNA:   3'- gCGA-CCGUUG-----------GGAcCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 7787 0.69 0.183666
Target:  5'- cCGCcGGCGugACCgaGGCgGUCCUcgaggcgaaccacGGCCu -3'
miRNA:   3'- -GCGaCCGU--UGGgaCCGgCAGGA-------------CCGG- -5'
12032 3' -61.8 NC_003278.1 + 8035 0.66 0.272006
Target:  5'- uGCUGuucGguGCCCUGcUCGgcgCCUGGCUg -3'
miRNA:   3'- gCGAC---CguUGGGACcGGCa--GGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 8723 0.71 0.13292
Target:  5'- uCGgUGGCGGCgCCgaagUGGCCGUCCucguagagguUGGCg -3'
miRNA:   3'- -GCgACCGUUG-GG----ACCGGCAGG----------ACCGg -5'
12032 3' -61.8 NC_003278.1 + 8740 0.84 0.01285
Target:  5'- uCGCUGGCccgaaGACCCUGGCCGcCCUcGGCg -3'
miRNA:   3'- -GCGACCG-----UUGGGACCGGCaGGA-CCGg -5'
12032 3' -61.8 NC_003278.1 + 9469 0.66 0.29318
Target:  5'- gCGCaGGCccgccuGGCCCaGGCCGagUUGGCg -3'
miRNA:   3'- -GCGaCCG------UUGGGaCCGGCagGACCGg -5'
12032 3' -61.8 NC_003278.1 + 9550 0.67 0.235794
Target:  5'- uCGCUGGCuuuccucgccaacucGGCCUgGGCCaGgcgggCCUGcGCCa -3'
miRNA:   3'- -GCGACCG---------------UUGGGaCCGG-Ca----GGAC-CGG- -5'
12032 3' -61.8 NC_003278.1 + 9570 0.67 0.233368
Target:  5'- cCGCgagcGCcaGGCCCaGGCCGaCCUGGaCCa -3'
miRNA:   3'- -GCGac--CG--UUGGGaCCGGCaGGACC-GG- -5'
12032 3' -61.8 NC_003278.1 + 9610 0.7 0.140439
Target:  5'- uCGCgggaaagGGCGGCCUcgagGGCCGUgauggugccggCCUGGCg -3'
miRNA:   3'- -GCGa------CCGUUGGGa---CCGGCA-----------GGACCGg -5'
12032 3' -61.8 NC_003278.1 + 11874 0.71 0.129302
Target:  5'- gGCUGGCuGCCUUGGgcaUCG-CCgcgGGCCg -3'
miRNA:   3'- gCGACCGuUGGGACC---GGCaGGa--CCGG- -5'
12032 3' -61.8 NC_003278.1 + 12641 0.71 0.129302
Target:  5'- gGgUGGCGucaaucucaugaGCaCCUGGCCGgccaggUUCUGGCCg -3'
miRNA:   3'- gCgACCGU------------UG-GGACCGGC------AGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 12986 0.69 0.174546
Target:  5'- aGCUGGuCGaggucagcGCCCUGGgCG--CUGGCCa -3'
miRNA:   3'- gCGACC-GU--------UGGGACCgGCagGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 13693 0.71 0.118985
Target:  5'- uGCccGGUcGCCCUucuGCCGUaCCUGGCCu -3'
miRNA:   3'- gCGa-CCGuUGGGAc--CGGCA-GGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 13740 0.7 0.154119
Target:  5'- uCGCUGGgaCAGCaCCUGGCCGgagcgugugaagcgCCaGGUCa -3'
miRNA:   3'- -GCGACC--GUUG-GGACCGGCa-------------GGaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.