miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12032 3' -61.8 NC_003278.1 + 1299 0.67 0.252078
Target:  5'- uGCUGaCAaaGCCCUGGCCa-CaaGGCCa -3'
miRNA:   3'- gCGACcGU--UGGGACCGGcaGgaCCGG- -5'
12032 3' -61.8 NC_003278.1 + 21623 0.69 0.184158
Target:  5'- uGCUGGCcAUgCUGGgCGaCCUGGgCa -3'
miRNA:   3'- gCGACCGuUGgGACCgGCaGGACCgG- -5'
12032 3' -61.8 NC_003278.1 + 3922 0.68 0.199452
Target:  5'- cCGCccUGGUAGCgCUGGauCCGcgCCUGGCg -3'
miRNA:   3'- -GCG--ACCGUUGgGACC--GGCa-GGACCGg -5'
12032 3' -61.8 NC_003278.1 + 19046 0.68 0.201572
Target:  5'- gGCgaaGGCAGCCucccugauCgcguagaaaacgccaUGGCCGaCCUGGCCg -3'
miRNA:   3'- gCGa--CCGUUGG--------G---------------ACCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 22119 0.68 0.20479
Target:  5'- gGCagaUGGCuGACaCCgGGUCGgCCUGGCCc -3'
miRNA:   3'- gCG---ACCG-UUG-GGaCCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 3488 0.68 0.210253
Target:  5'- uGCcgUGGUAGCCCUGGgCaGUCCgcgcguugGuGCCg -3'
miRNA:   3'- gCG--ACCGUUGGGACCgG-CAGGa-------C-CGG- -5'
12032 3' -61.8 NC_003278.1 + 27784 0.67 0.233368
Target:  5'- gGCUGGuCAGCCaguacgaaGCCG-CCaUGGCCg -3'
miRNA:   3'- gCGACC-GUUGGgac-----CGGCaGG-ACCGG- -5'
12032 3' -61.8 NC_003278.1 + 9570 0.67 0.233368
Target:  5'- cCGCgagcGCcaGGCCCaGGCCGaCCUGGaCCa -3'
miRNA:   3'- -GCGac--CG--UUGGGaCCGGCaGGACC-GG- -5'
12032 3' -61.8 NC_003278.1 + 2375 0.67 0.250153
Target:  5'- gGCacGGCcACCCUGGCgCGggaugaacucgccuUCCUGGgCg -3'
miRNA:   3'- gCGa-CCGuUGGGACCG-GC--------------AGGACCgG- -5'
12032 3' -61.8 NC_003278.1 + 7787 0.69 0.183666
Target:  5'- cCGCcGGCGugACCgaGGCgGUCCUcgaggcgaaccacGGCCu -3'
miRNA:   3'- -GCGaCCGU--UGGgaCCGgCAGGA-------------CCGG- -5'
12032 3' -61.8 NC_003278.1 + 20823 0.69 0.179295
Target:  5'- cCGUUGGCAGCCUUGccaucacccucGCCGgcaUUCUcGGCCc -3'
miRNA:   3'- -GCGACCGUUGGGAC-----------CGGC---AGGA-CCGG- -5'
12032 3' -61.8 NC_003278.1 + 4725 0.7 0.156655
Target:  5'- ---cGGCAagGCCUacuUGGUCGgCCUGGCCa -3'
miRNA:   3'- gcgaCCGU--UGGG---ACCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 8740 0.84 0.01285
Target:  5'- uCGCUGGCccgaaGACCCUGGCCGcCCUcGGCg -3'
miRNA:   3'- -GCGACCG-----UUGGGACCGGCaGGA-CCGg -5'
12032 3' -61.8 NC_003278.1 + 22828 0.73 0.087384
Target:  5'- gCGCUGGCGGgCCU-GCCGaUCCUgcagcuggaccaGGCCa -3'
miRNA:   3'- -GCGACCGUUgGGAcCGGC-AGGA------------CCGG- -5'
12032 3' -61.8 NC_003278.1 + 20271 0.73 0.092466
Target:  5'- uGCUcGGCAACgCUGG-CGUCCagggcagcaUGGCCg -3'
miRNA:   3'- gCGA-CCGUUGgGACCgGCAGG---------ACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21439 0.72 0.097827
Target:  5'- gGCgGGUucACCaUGGCCGgCCUGGCCc -3'
miRNA:   3'- gCGaCCGu-UGGgACCGGCaGGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 13693 0.71 0.118985
Target:  5'- uGCccGGUcGCCCUucuGCCGUaCCUGGCCu -3'
miRNA:   3'- gCGa-CCGuUGGGAc--CGGCA-GGACCGG- -5'
12032 3' -61.8 NC_003278.1 + 21022 0.71 0.122336
Target:  5'- gGcCUGGCcgccAACCC-GGUgGUCCUGGCa -3'
miRNA:   3'- gC-GACCG----UUGGGaCCGgCAGGACCGg -5'
12032 3' -61.8 NC_003278.1 + 11874 0.71 0.129302
Target:  5'- gGCUGGCuGCCUUGGgcaUCG-CCgcgGGCCg -3'
miRNA:   3'- gCGACCGuUGGGACC---GGCaGGa--CCGG- -5'
12032 3' -61.8 NC_003278.1 + 13740 0.7 0.154119
Target:  5'- uCGCUGGgaCAGCaCCUGGCCGgagcgugugaagcgCCaGGUCa -3'
miRNA:   3'- -GCGACC--GUUG-GGACCGGCa-------------GGaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.