miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12034 3' -57.9 NC_003278.1 + 13676 0.69 0.275953
Target:  5'- -gCGCCAgGgCUUCGgCGGCCAGGc- -3'
miRNA:   3'- cgGCGGUgUgGAAGCgGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 4605 0.69 0.28171
Target:  5'- cGUCGCCauagGCGCCgaacucaccaGCCGGCCAGGc- -3'
miRNA:   3'- -CGGCGG----UGUGGaag-------CGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 8791 0.69 0.290525
Target:  5'- uGCUGCagaACGCCgaccucgUCGCC-GCCGGAg- -3'
miRNA:   3'- -CGGCGg--UGUGGa------AGCGGuCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 21214 0.69 0.290525
Target:  5'- gGCCugauguaCCGCGCCUUCGCCGGCg----- -3'
miRNA:   3'- -CGGc------GGUGUGGAAGCGGUCGgucuac -5'
12034 3' -57.9 NC_003278.1 + 13516 0.68 0.305694
Target:  5'- cGCCGCCACACCagcccaggCGCCcuacugcaCCGGAa- -3'
miRNA:   3'- -CGGCGGUGUGGaa------GCGGuc------GGUCUac -5'
12034 3' -57.9 NC_003278.1 + 22084 0.68 0.32631
Target:  5'- cGUCGCCGCgACCgacgaacuggcgCGCCGGCUGGGc- -3'
miRNA:   3'- -CGGCGGUG-UGGaa----------GCGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 25716 0.68 0.329572
Target:  5'- aCUGCC-CugCUUaucUGCCuuAGCCAGAUGa -3'
miRNA:   3'- cGGCGGuGugGAA---GCGG--UCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 20831 0.68 0.337831
Target:  5'- aGCCuuGCCAuCACCcUCGCCggcauucucGGCCcGAUGa -3'
miRNA:   3'- -CGG--CGGU-GUGGaAGCGG---------UCGGuCUAC- -5'
12034 3' -57.9 NC_003278.1 + 22658 0.68 0.337831
Target:  5'- cGCUGUCACuCCagC-CCAGCCAGAg- -3'
miRNA:   3'- -CGGCGGUGuGGaaGcGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 32285 0.68 0.338665
Target:  5'- uGCCGCUGC-CCggcgauaucgacgcCGCCGGCCcGAUGc -3'
miRNA:   3'- -CGGCGGUGuGGaa------------GCGGUCGGuCUAC- -5'
12034 3' -57.9 NC_003278.1 + 19739 0.67 0.354798
Target:  5'- cGCUGCCGCGCUg--GCCGGCacCGGcAUGg -3'
miRNA:   3'- -CGGCGGUGUGGaagCGGUCG--GUC-UAC- -5'
12034 3' -57.9 NC_003278.1 + 32065 0.67 0.363504
Target:  5'- aCCGggucaucagcCCAUGCC-UCGCCcaucAGCCAGAUGc -3'
miRNA:   3'- cGGC----------GGUGUGGaAGCGG----UCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 15636 0.67 0.363504
Target:  5'- cGUCGCguUGCCUUCGC-GGUCGGAUa -3'
miRNA:   3'- -CGGCGguGUGGAAGCGgUCGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 9035 0.67 0.370575
Target:  5'- aCCGCCgaGCACCagCGCCuggcgaacgcucGCCAGAUc -3'
miRNA:   3'- cGGCGG--UGUGGaaGCGGu-----------CGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 30484 0.67 0.372357
Target:  5'- gGCCGCCG-ACCacCGCCAGa-AGGUGg -3'
miRNA:   3'- -CGGCGGUgUGGaaGCGGUCggUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 4744 0.67 0.372357
Target:  5'- gGCCugGCCAuCACCgacuccccCGCCAGCCuGGGUa -3'
miRNA:   3'- -CGG--CGGU-GUGGaa------GCGGUCGG-UCUAc -5'
12034 3' -57.9 NC_003278.1 + 6933 0.67 0.381355
Target:  5'- cCCGCCGCACUUgUCGUgCAGUUGGAUc -3'
miRNA:   3'- cGGCGGUGUGGA-AGCG-GUCGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 18339 0.66 0.409206
Target:  5'- uGCCGCCcccgcggaAgGCCUccaucUUGCgGGCCAGcgGg -3'
miRNA:   3'- -CGGCGG--------UgUGGA-----AGCGgUCGGUCuaC- -5'
12034 3' -57.9 NC_003278.1 + 14201 0.66 0.409206
Target:  5'- cGCUGCCGCGCCgaUGUCGGUgagCAGGc- -3'
miRNA:   3'- -CGGCGGUGUGGaaGCGGUCG---GUCUac -5'
12034 3' -57.9 NC_003278.1 + 16750 0.66 0.409206
Target:  5'- cGCCGCCaACugCg-CGaCUGGCCGGAg- -3'
miRNA:   3'- -CGGCGG-UGugGaaGC-GGUCGGUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.