Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12034 | 3' | -57.9 | NC_003278.1 | + | 34575 | 1.09 | 0.000288 |
Target: 5'- uGCCGCCACACCUUCGCCAGCCAGAUGc -3' miRNA: 3'- -CGGCGGUGUGGAAGCGGUCGGUCUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 19806 | 0.82 | 0.032173 |
Target: 5'- uGCCGCCAUGCCggUGCCGGCCAGc-- -3' miRNA: 3'- -CGGCGGUGUGGaaGCGGUCGGUCuac -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 14687 | 0.75 | 0.104981 |
Target: 5'- cGCCGaCCAgGCCgUUGCCGGCCAGc-- -3' miRNA: 3'- -CGGC-GGUgUGGaAGCGGUCGGUCuac -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 5308 | 0.75 | 0.104981 |
Target: 5'- cGCCGuCCAgACCUUCGCCgucgAGCCGaGUGu -3' miRNA: 3'- -CGGC-GGUgUGGAAGCGG----UCGGUcUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 31857 | 0.75 | 0.108053 |
Target: 5'- uCCGCCGCGCCgccggcgggCGCCGaCCGGAUGc -3' miRNA: 3'- cGGCGGUGUGGaa-------GCGGUcGGUCUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 33218 | 0.74 | 0.121204 |
Target: 5'- uGCgGCCGagGCCaUCGCCGGCguGAUGg -3' miRNA: 3'- -CGgCGGUg-UGGaAGCGGUCGguCUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 21453 | 0.73 | 0.159928 |
Target: 5'- gGCCgGCCugGCCcagggccucggCGCCGGCCAGGc- -3' miRNA: 3'- -CGG-CGGugUGGaa---------GCGGUCGGUCUac -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 6469 | 0.72 | 0.165374 |
Target: 5'- cGCUGCCuuGCCUUCGUCGGaUUGGAUGu -3' miRNA: 3'- -CGGCGGugUGGAAGCGGUC-GGUCUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 28173 | 0.72 | 0.165374 |
Target: 5'- uGUCGCCGCACUUgccgCGCCcGCagCGGAUGa -3' miRNA: 3'- -CGGCGGUGUGGAa---GCGGuCG--GUCUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 9080 | 0.72 | 0.165374 |
Target: 5'- aCCGCCGC-CCUggaGUCGGCCAGuUGg -3' miRNA: 3'- cGGCGGUGuGGAag-CGGUCGGUCuAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 1662 | 0.72 | 0.17482 |
Target: 5'- aGCCGCgACgACCacUCGCCGGCCuGcgGg -3' miRNA: 3'- -CGGCGgUG-UGGa-AGCGGUCGGuCuaC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 21538 | 0.72 | 0.179721 |
Target: 5'- gGCCGUCAgGCUgUCGCCGGCCucGAc- -3' miRNA: 3'- -CGGCGGUgUGGaAGCGGUCGGu-CUac -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 12559 | 0.72 | 0.184744 |
Target: 5'- aCCgGCCAgaACCUg-GCCGGCCAGGUGc -3' miRNA: 3'- cGG-CGGUg-UGGAagCGGUCGGUCUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 23483 | 0.71 | 0.195162 |
Target: 5'- aGUCGCC--GCCggugUCGUCGGCCAGGUc -3' miRNA: 3'- -CGGCGGugUGGa---AGCGGUCGGUCUAc -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 14107 | 0.71 | 0.195162 |
Target: 5'- cGUCGCCAgGCCgUgGCgGGCCAGGa- -3' miRNA: 3'- -CGGCGGUgUGGaAgCGgUCGGUCUac -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 21528 | 0.71 | 0.217543 |
Target: 5'- gGCCgGCCugGCCggCGCCgaggcccugGGCCAGGc- -3' miRNA: 3'- -CGG-CGGugUGGaaGCGG---------UCGGUCUac -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 21842 | 0.7 | 0.223472 |
Target: 5'- uGUCGCUGC-CCg-CGCCGGCCuGGAUGg -3' miRNA: 3'- -CGGCGGUGuGGaaGCGGUCGG-UCUAC- -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 29444 | 0.7 | 0.223472 |
Target: 5'- cGCCGCCGCGCac-CGCCAcgucGcCCAGAa- -3' miRNA: 3'- -CGGCGGUGUGgaaGCGGU----C-GGUCUac -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 5443 | 0.7 | 0.229537 |
Target: 5'- cGUCaGCgGCACCaUCGCCAGCCGuaccGAUa -3' miRNA: 3'- -CGG-CGgUGUGGaAGCGGUCGGU----CUAc -5' |
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12034 | 3' | -57.9 | NC_003278.1 | + | 23150 | 0.7 | 0.255198 |
Target: 5'- -gCGCCACACCUacagCGaCC-GCCAGAg- -3' miRNA: 3'- cgGCGGUGUGGAa---GC-GGuCGGUCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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