miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12034 3' -57.9 NC_003278.1 + 8399 0.66 0.418767
Target:  5'- uCCGCCGCAgCgucucguugcUCGCCAGCCu---- -3'
miRNA:   3'- cGGCGGUGUgGa---------AGCGGUCGGucuac -5'
12034 3' -57.9 NC_003278.1 + 13516 0.68 0.305694
Target:  5'- cGCCGCCACACCagcccaggCGCCcuacugcaCCGGAa- -3'
miRNA:   3'- -CGGCGGUGUGGaa------GCGGuc------GGUCUac -5'
12034 3' -57.9 NC_003278.1 + 20831 0.68 0.337831
Target:  5'- aGCCuuGCCAuCACCcUCGCCggcauucucGGCCcGAUGa -3'
miRNA:   3'- -CGG--CGGU-GUGGaAGCGG---------UCGGuCUAC- -5'
12034 3' -57.9 NC_003278.1 + 32285 0.68 0.338665
Target:  5'- uGCCGCUGC-CCggcgauaucgacgcCGCCGGCCcGAUGc -3'
miRNA:   3'- -CGGCGGUGuGGaa------------GCGGUCGGuCUAC- -5'
12034 3' -57.9 NC_003278.1 + 19739 0.67 0.354798
Target:  5'- cGCUGCCGCGCUg--GCCGGCacCGGcAUGg -3'
miRNA:   3'- -CGGCGGUGUGGaagCGGUCG--GUC-UAC- -5'
12034 3' -57.9 NC_003278.1 + 9035 0.67 0.370575
Target:  5'- aCCGCCgaGCACCagCGCCuggcgaacgcucGCCAGAUc -3'
miRNA:   3'- cGGCGG--UGUGGaaGCGGu-----------CGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 4744 0.67 0.372357
Target:  5'- gGCCugGCCAuCACCgacuccccCGCCAGCCuGGGUa -3'
miRNA:   3'- -CGG--CGGU-GUGGaa------GCGGUCGG-UCUAc -5'
12034 3' -57.9 NC_003278.1 + 30484 0.67 0.372357
Target:  5'- gGCCGCCG-ACCacCGCCAGa-AGGUGg -3'
miRNA:   3'- -CGGCGGUgUGGaaGCGGUCggUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 16750 0.66 0.409206
Target:  5'- cGCCGCCaACugCg-CGaCUGGCCGGAg- -3'
miRNA:   3'- -CGGCGG-UGugGaaGC-GGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 21214 0.69 0.290525
Target:  5'- gGCCugauguaCCGCGCCUUCGCCGGCg----- -3'
miRNA:   3'- -CGGc------GGUGUGGAAGCGGUCGgucuac -5'
12034 3' -57.9 NC_003278.1 + 8791 0.69 0.290525
Target:  5'- uGCUGCagaACGCCgaccucgUCGCC-GCCGGAg- -3'
miRNA:   3'- -CGGCGg--UGUGGa------AGCGGuCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 23150 0.7 0.255198
Target:  5'- -gCGCCACACCUacagCGaCC-GCCAGAg- -3'
miRNA:   3'- cgGCGGUGUGGAa---GC-GGuCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 5308 0.75 0.104981
Target:  5'- cGCCGuCCAgACCUUCGCCgucgAGCCGaGUGu -3'
miRNA:   3'- -CGGC-GGUgUGGAAGCGG----UCGGUcUAC- -5'
12034 3' -57.9 NC_003278.1 + 31857 0.75 0.108053
Target:  5'- uCCGCCGCGCCgccggcgggCGCCGaCCGGAUGc -3'
miRNA:   3'- cGGCGGUGUGGaa-------GCGGUcGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 33218 0.74 0.121204
Target:  5'- uGCgGCCGagGCCaUCGCCGGCguGAUGg -3'
miRNA:   3'- -CGgCGGUg-UGGaAGCGGUCGguCUAC- -5'
12034 3' -57.9 NC_003278.1 + 21453 0.73 0.159928
Target:  5'- gGCCgGCCugGCCcagggccucggCGCCGGCCAGGc- -3'
miRNA:   3'- -CGG-CGGugUGGaa---------GCGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 9080 0.72 0.165374
Target:  5'- aCCGCCGC-CCUggaGUCGGCCAGuUGg -3'
miRNA:   3'- cGGCGGUGuGGAag-CGGUCGGUCuAC- -5'
12034 3' -57.9 NC_003278.1 + 21538 0.72 0.179721
Target:  5'- gGCCGUCAgGCUgUCGCCGGCCucGAc- -3'
miRNA:   3'- -CGGCGGUgUGGaAGCGGUCGGu-CUac -5'
12034 3' -57.9 NC_003278.1 + 12559 0.72 0.184744
Target:  5'- aCCgGCCAgaACCUg-GCCGGCCAGGUGc -3'
miRNA:   3'- cGG-CGGUg-UGGAagCGGUCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 5443 0.7 0.229537
Target:  5'- cGUCaGCgGCACCaUCGCCAGCCGuaccGAUa -3'
miRNA:   3'- -CGG-CGgUGUGGaAGCGGUCGGU----CUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.